Publications Acknowledging the LFD
The Laboratory for Fluorescence Dynamics (LFD) should be acknowledged in any publications arising from the data collected in the LFD using the following text:
"The experiments reported in this paper were performed at the Laboratory for Fluorescence Dynamics (LFD) at the University of California, Irvine (UCI). The LFD is supported jointly by the National Center for Research Resources of the National Institutes of Health (PHS 5 P41-RR003155) and UCI."
2009
- Image analysis for denoising full-field frequency-domain fluorescence lifetime images.J Microsc. 2009; 235(2): 221-237.
- Contrast sensitivity of cats and humans in scotopic and mesopic conditions.J Neurophysiol. 2009; 102(2): 831-840. PMCID: PMC2724355
- Sequence of physical changes to the cell membrane during glucocorticoid-induced apoptosis in S49 lymphoma cells.Biophys J. 2009; 96(7): 2709-2718. PMCID: PMC2711280
- Förster Resonance Energy Transfer - FRET what is it, why do it, and how it's done.FRET and FLIM Techniques (Laboratory Techniques in Biochemistry and Molecular Biology, Vol. 33). By TWJ Gadella (Editors). Elsevier Science, pp. 1-57, 2009. ISBN: 9780080549583
2008
- PALM. Photo-activated localization microscopy.Laurea in Fisica e Tecnologie Biomediche. Università degli studi di Trento, 2008.
Advisor: Renzo Antolini - Use of fluorescence to determine the effects of cholesterol on lipid behavior in sphingomyelin liposomes and erythrocyte membranes.J Lipid Res. 2008; 49(6): 1202-1215. PMCID: PMC2386901
- Effects of cholesterol on physical properties of human erythrocyte membranes: impact on susceptibility to hydrolysis by secretory phospholipase A2.Biophys J. 2008; 94(8): 3084-3093. PMCID: PMC2275687
- Mechanisms by which apoptotic membranes become susceptible to secretory phospholipase A2.Master in Physiology and Developmental Biology, Brigham Young University, 2008.
Advisor: John D Bell - Rapid frequency-domain FLIM spinning disk confocal microscope: lifetime resolution, image improvement and wavelet analysis.J Fluoresc. 2008; 18(5): 929-942.
- Multi scale fluorescence studies: The spinning disk confocal fluorescence lifetime imaging microscopy & single molecule nano-metronome & single molecule study of tetramethyrhodamine-DNA interaction.PhD in Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, 2008.
Advisor: Robert M Clegg
2007
- Sucrose synthase oligomerization and F-actin association are regulated by sucrose concentration and phosphorylation.Plant Cell Physiol. 2007; 48(11): 1612-23.
- Relationship between membrane physical properties and secretory phospholipase A2 hydrolysis kinetics in S49 cells during ionophore-induced apoptosis.Biophys J. 2007; 93(7): 2350-62. PMCID: PMC1965435
- Phagocytosis of cholesteryl ester is amplified in diabetic mouse macrophages and is largely mediated by CD36 and SR-A.PLoS One. 2007; 2(6): e511. PMCID: PMC1876806
2006
- Modulation of reconstituted pig kidney Na+/K(+)-ATPase activity by cholesterol in endogenous lipid vesicles: role of lipid domains.Biochemistry. 2006; 45(46): 13855-68.
- Absence of fluid-ordered/fluid-disordered phase coexistence in ceramide/POPC mixtures containing cholesterol.Biophys J. 2006; 90(12): 4437-51. PMCID: PMC1471871
- Fluorescence correlation spectroscopy and fluorescence lifetime imaging microscopy.Nephron Exp Nephrol. 2006; 103(2): e41–e49.
- Detection of DNA hybridization using the near-infrared band-gap fluorescence of single-walled carbon nanotubes.Nano Lett. 2006; 6(3): 371-375.
- Use of steady-state Laurdan fluorescence to detect changes in liquid ordered phases in human erythrocyte membranes.J Membrane Biol. 2006; 211(1): 15-25.
- Fluorescent DNAzyme biosensors for metal ions based on catalytic molecular beacons.Fluorescent Energy Transfer Nucleic Acid Probes Designs and Protocols (Methods in Molecular Biology, Vol. 335). By VV Didenko (Editors). Humana Press, pp. 275-288, 2006. ISBN: 9781588293800
- Multi-fluorophore fluorescence resonance energy transfer for probing nucleic acids structure and folding.Fluorescent Energy Transfer Nucleic Acid Probes Designs and Protocols (Methods in Molecular Biology, Vol. 335). By VV Didenko (Editors). Humana Press, pp. 257-71, 2006. ISBN: 9781588293800
2005
- A highly active anion-selective aminocyclodextrin ion channel.Angew Chem Int Ed Engl. 2005; 44(46): 7584-7.
- Mechanistic investigation of a highly active phosphite dehydrogenase mutant and its application for NADPH regeneration.FEBS J. 2005; 272(15): 3816-27.
- Effect of guest molecule flexibility in access to dendritic interiors.Org Lett. 2005; 7(14): 2809-12.
- Acute and chronic changes in cholesterol modulate Na-Pi cotransport activity in OK cells.Am J Physiol Renal Physiol. 2005; 289(1): F154-65.
- Inhibition and pH dependence of phosphite dehydrogenase.Biochemistry. 2005; 44(17): 6640-9.
- Mechanisms governing the level of susceptibility of erythrocyte membranes to secretory phospholipase A2.Biophys J. 2005; 88(4): 2692-2705. PMCID: PMC1305365
- Site-directed mutagenesis of active site residues of phosphite dehydrogenase.Biochemistry. 2005; 44(12): 4765-74.
2004
- Enthalpy-driven apolipoprotein A-I and lipid bilayer interaction indicating protein penetration upon lipid binding.Biochemistry. 2004; 43(38): 12258-64.
- Structural determinants of PLD2 inhibition by α-synuclein.J Mol Biol. 2004; 337(4): 1001-9.
- Divalent cations increase lipid order in erythrocytes and susceptibility to secretory phospholipase A2.Biophys J. 2004; 86(4): 2251-2260. PMCID: PMC1304075
- Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy.Biophys J. 2004; 86(4): 2530–2537. PMCID: PMC1304100
2003
- Improving fluorescent DNAzyme biosensors by combining inter- and intramolecular quenchers.Anal Chem. 2003; 75(23): 6666-72.
- Fluorescence methods in liposome research.Liposomes 2nd ed: A Practical Approach (The Practical Approach Series, Vol. 264). By V Torchilin and V Weissig (Editors). Oxford University Press, USA, pp. 105-147, 2003. ISBN: 9780199636549
- New highly sensitive and selective catalytic DNA biosensors for metal ions.Biosens Bioelectr. 2003; 18(5-6): 529-40.
- Direct observation of lipid domains in free standing bilayers: from simple to complex lipid mixtures.Chem Phys Lipids. 2003; 122(1-2): 137-45.
2002
- FRET study of a trifluorophore-labeled DNAzyme.J Am Chem Soc. 2002; 124(51): 15208-16.
- Protein-RNA interactions and virus stability as probed by the dynamics of Tryptophan side chains.J Biol Chem. 2002; 277(49): 47596-47602.
- Absolute comparison of simulated and experimental protein-folding dynamics.Nature. 2002; 420(6911): 102-106.
- Observation of assembly of fluorescent Si nanoparticles under the influence of electric current.J Nanosci Nanotechnol. 2002; 2(5): 471-3.
- Use of laurdan fluorescence intensity and polarization to distinguish between changes in membrane fluidity and phospholipid order.Biochim Biophys Acta. 2002; 1565(1): 123-128.
- Activation of dynamin II by POPC in giant unilamellar vesicles: a two-photon fluorescence microscopy study.J Protein Chem. 2002; 21(6): 383-391.
- The energy efficiency of formation of photons, radicals and ions during single-bubble cavitation.Nature. 2002; 418(6896): 394-397.
- Segregation of saturated chain lipids in pulmonary surfactant films and bilayers.Biophys J. 2002; 82(4): 2041-51. PMCID: PMC1301999
- Folding and stability of the C-terminal half of apolipoprotein A-I examined with a Cys-specific fluorescence probe.Biochim Biophys Acta. 2002; 1594(2): 286-96.
2001
- Physical properties of erythrocyte ghosts that determine susceptibility to secretory phospholipase A2.J Biol Chem. 2001; 276(25): 22722-22731.
- A quantitative assessment of heterogeneity for surface-immobilized proteins.Anal Chem. 2001; 73(3): 471-80.
2000
- Modulation of pig kidney Na+/K+-ATPase activity by cholesterol: role of hydration.Biochemistry. 2000; 39(35): 10928-35.
- High-pressure denaturation of apomyoglobin.Biochim Biophys Acta. 2000; 1480(1-2): 353-64.
1999
- Global and local dynamics of the human U1A protein determined by tryptophan fluorescence.Protein Sci. 1999; 8(10): 2110-2120. PMCID: PMC2144131
- Time-resolved fluorescence of O-acetylserine sulfhydrylase.Biochim Biophys Acta. 1999; 1429(2): 317-30.
1998
- Conformational changes between the active-site and regulatory light chain of myosin as determined by luminescence resonance energy transfer: The effect of nucleotides and actin.Proc Natl Acad Sci USA. 1998; 95(26): 15309-15314. PMCID: PMC28039
- Oligomeric state of human erythrocyte band 3 measured by fluorescence resonance energy homotransfer.Biophys J. 1998; 75(2): 1117-1130. PMCID: PMC1299786
- Flexibility involving the intermolecular dityrosyl cross-links of enzymatically polymerized calmodulin.Biochemistry. 1998; 37(23): 8378-84.
- Escherichia coli cAMP receptor protein-DNA complexes. 2. Structural asymmetry of DNA bending.Biochemistry. 1998; 37(15): 5201-10.
1997
- A flow cytometric method for measurement of intracellular chloride concentration in lymphocytes using the halide-specific probe 6-methoxy-N-(3-sulfopropyl) quinolinium (SPQ).Cytometry. 1997; 28(4): 316-22.
- Time-resolved fluorescence studies on site-directed mutants of human serum albumin.FEBS Lett. 1997; 408(1): 67-70.
- Analysis of the intracellular processing of proteins: application of fluorescence polarization and a novel fluorescent probe.Cytometry. 1997; 28(1): 25-35.
1996
- Anti-metatype antibody stabilization of Fv 4-4-20 variable domain dynamics.J Biol Chem. 1996; 271(19): 11247-52.
- Comparative properties of the single chain antibody and Fv derivatives of mAb 4-4-20. Relationship between interdomain interactions and the high affinity for fluorescein ligand.J Biol Chem. 1996; 271(10): 5338-46.
- Temperature and pH dependence of fluorescein binding within the monoclonal antibody 9-40 active site as monitored by hydrostatic pressure.J Biol Chem. 1996; 271(10): 5332-7.
- Time-resolved fluorescence anisotropy of fluorescent-labeled lysophospholipid and taurodeoxycholate aggregates.Biophys J. 1996; 70(3): 1466-71. PMCID: PMC1225073
- Molecular recognition by calmodulin: pressure-induced reorganization of a novel calmodulin-peptide complex.Biochemistry. 1996; 35(5): 1599-1605.
1993
- Pressure-induced dissociation of fluorescein from the anti-fluorescein single-chain antibody 4-4-20.Biochemistry. 1993; 32(41): 10929-35.
1992
- Solution studies of the interactions between the histone core proteins and DNA using fluorescence spectroscopy.Biophys Chem. 1992; 43(2): 197-211.
- Relative binding properties of fluorescein and 9-hydroxyphenylfluoron (HPF) with murine monoclonal anti-fluorescein antibodies.Biochim Biophys Acta. 1992; 1119(1): 27-34.
1991
- Dissociation of purified erythrocyte Ca(2+)-ATPase by hydrostatic pressure.J Biol Chem. 1991; 266(33): 22266-72.
- Selective binding of cholesterol by recombinant fatty acid binding proteins.J Biol Chem. 1991; 266(26): 17180-6.
- Polyene fatty acid interactions with recombinant intestinal and liver fatty acid-binding proteins. Spectroscopic studies.J Biol Chem. 1991; 266(26): 17112-23.
- Fluorescence measurements of immune complexes of Mab 4-4-20 with isomeric haptens.Biophys J. 1991; 59(3): 619-28. PMCID: PMC1281226
- Structural microheterogeneity of a tryptophan residue required for efficient biological electron transfer between putidaredoxin and cytochrome P-450CAM.Biochemistry. 1991; 30(7): 1845-51.
1990
- Structure of apolipoprotein A-I in three homogeneous, reconstituted high density lipoprotein particles.J Biol Chem. 1990; 265(32): 20037-43.
- Characteristics of self-quenching of the fluorescence of lipid-conjugated rhodamine in membranes.J Biol Chem. 1990; 265(23): 13533-9.
- Time-resolved fluorometric and differential scanning calorimetric investigation of dehydroergosterol in 1-stearoyl-2-caprylphosphatidylcholine bilayers.Biochemistry. 1990; 29(5): 1315-22.
1989
- Fluorescence studies of the conformational dynamics of parvalbumin in solution: lifetime and rotational motions of the single tryptophan residue.Biochemistry. 1989; 28(26): 10066-10072.
1988
- Cryoprecipitation properties of a high-affinity monoclonal IgM anti-fluorescyl antibody.Mol Immunol. 1988; 25(12): 1309-20.
- Determination of cytochrome b5 association reactions. Characterization of metmyoglobin and cytochrome P-450cam binding to genetically engineered cytochrome B5.J Biol Chem. 1988; 263(27): 13544-8.
