Internal
Journal Articles and Book Chapters
by members of the Laboratory for Fluorescence Dynamics (LFD) from 1987 to present.
2008
- Chromatin dynamics during interphase explored by single-particle tracking.Chromosome Res. 16(3): 439-449, 2008.
- Genetically encoded probe for fluorescence lifetime imaging of CaMKII activity.Biochem Biophys Res Commun 369(2): 519-525, 2008.
- Self-assembly of nanostructured polymetallaynes polymer.Polymer [accepted], 2008.
- Paxillin dynamics measured during adhesion assembly and disassembly by correlation spectroscopy.Biophys J 94(7): 2819-2831, 2008.
- Yeast ribosomal stalk heterogeneity in vivo shown by two-photon FCS and molecular brightness analysis.Biophys J 94(7): 2884-2890, 2008.
- Mapping the number of molecules and brightness in the laser scanning microscope.Biophys J 94(6): 2320-2332, 2008.
- Image correlation spectroscopy of multiphoton images correlates with collagen mechanical properties.Biophys J 94(6): 2361-2373, 2008.
- A novel fluorescence lifetime imaging system that optimizes photon efficiency.Microsc Res Tech 71(3): 201-213, 2008.
- Detecting cholesterol changes in lipid bilayers.BioWorld Europe 1: 8-11, 2008.
- The Phasor approach to fluorescence lifetime imaging analysis.Biophys J 94(2): L14-16, 2008.
- Fluorescence studies of the interactions of ubiquinol-10 with liposomes.Photochem Photobiol 84(1): 209-214, 2008.
- Determination of particle number and brightness using a laser scanning confocal microscope operating in the analog mode.Microsc Res Tech 71(1): 69-81, 2008.
- Phase fluctuation on the micron-submicron scale in GUVs composed of a binary lipid mixture.Biophys J 94(1): 104-116, 2008.
- Raster image correlation spectroscopy (RICS) for measuring fast protein dynamics and concentrations with a commercial laser scanning confocal microscope.J Microsc 229(1): 78-91, 2008.
2007
- Monomer–dimer dynamics and distribution of GPI-anchored uPAR are determined by cell surface protein assemblies.J Cell Biol 179(5): 1067-1082, 2007.
- Noninvasive determination of brain tissue oxygenation during sleep in obstructive sleep apnea: a near-infrared spectroscopic approach.Sleep 30(12): 1747-1755, 2007.
- Laurdan generalized polarization: from cuvette to microscope.In Modern Research and Educational Topics in Microscopy. Vol. 2: Applications in Physical/Chemical Sciences (Microscopy Book Series, Vol. 3). By A Méndez-Vilas and J Díaz (Editors). Formatex Research Center, Badajoz, Spain, pp. 1007-1014, 2007. ISBN 9788461194209.
- Regional differences of hemodynamics and oxygenation in the human calf muscle detected with near-infrared spectrophotometry.J Vasc Interv Radiol 18(9): 1094-1101, 2007.
- Effect of age on brain oxygenation regulation during changes in position.J Neurosci Methods 164(2): 308-311, 2007.
- Fluorescence microscopy to study pressure between lipids in giant unilamellar vesicles.In Methods in Membrane Lipids (Methods in Molecular Biology, Vol. 400). By AM Dopico (Editors). Humana Press, pp. 333-340, 2007. ISBN 1588296628.
- Interaction of high density lipoprotein particles with membranes containing cholesterol.J Lipid Res 48(8): 1689-1700, 2007.
- Exploring dynamics in living cells by tracking single particles.Cell Biochem Biophys 48(1): 1-15, 2007.
- The antibiotic viomycin traps the ribosome in an intermediate state of translocation.Nat Struct Mol Biol 14: 493-497, 2007.
- The RICS method: Measurement of fast dynamics in cells with the laser scanning microscope.In Image Analysis in Medical Microscopy and Pathology. By HS Wu and AJ Einstein (Editors). Research Signpost, Kerala, pp. 207-224, 2007. ISBN 8130801167.
- Fluorescence lifetime imaging microscopy of chlamydomonas reinhardtii: non-photochemical quenching mutants and the effect of photosynthetic inhibitors on the slow chlorophyll fluorescence transient.J Microsc 226(2): 90-120, 2007.
- Observation of intersubunit movement of the ribosome in solution using FRET.J Mol Biol 370(3): 530-540, 2007.
- Intrinsic tumor biomarkers revealed by novel double-differential spectroscopic analysis of near-infrared spectra.J Biomed Opt 12(2): 020509, 2007.
- Fluorescence lifetime standards for time and frequency domain fluorescence spectroscopy.Anal Chem 79(5): 2137-49, 2007.
- Detection of cerebral ischemia in neurovascular surgery using quantitative frequency-domain near-infrared spectroscopy.J Neurosurg 106(2): 283-290, 2007.
- Effects of vasodilation on intrinsic optical signals in the mammalian brain: a phantom study.J Biomed Opt 11(6): 064020, 2007.
2006
- Sunscreen enhancement of UV-induced reactive oxygen species in the skin.Free Radic Biol Med 41(8): 1205-12, 2006.
- Pressure tuning of the morphology of heterogeneous lipid vesicles: a two-photon-excitation fluorescence microscopy study.Biophys J 91(8): 2936-42, 2006.
- Capillary electrophoresis of ultrasmall carboxylate functionalized silicon nanoparticles.J Chem Phys 125(8): 081103, 2006.
- Laser sources for confocal microscopy.In The Handbook of Biological Confocal Microscopy (Third Edition). By JB Pawley (Editors). Springer-Verlag New York, pp. 80-118, 2006. ISBN 9780387259215.
- 3D particle tracking on a two-photon microscope.J Fluoresc 16(3): 325-36, 2006.
- Structure and dynamics of the epidermal growth factor receptor C-terminal phosphorylation domain.Protein Sci 15(5): 1142-52, 2006.
- Carboxyl functionalization of ultrasmall luminescent silicon nanoparticles through thermal hydrosilylation.J Mater Chem 16: 1421-1430, 2006.
- Visualizing association of N-ras in lipid microdomains: influence of domain structure and interfacial adsorption.J Am Chem Soc 128(1): 192-201, 2006.
- Fluctuation correlation spectroscopy in cells: Determination of molecular aggregation.In Biophotonics: Optical Science and Engineering for the 21st Century (Vol. XVIII). By X Shen and R van Wijk (Editors). Springer Verlag, pp. 1-14, 2006. ISBN 9780387249957.
- Modulation of an optical needle's reflectivity alters the average photon path through scattering media.J Biomed Opt 11(1): 014023, 2006.
- Melanosomes transported by myosin-V in Xenopus melanophores perform slow 35 nm steps.Biophys J 90(1): L07-9, 2006.
- Organelle transport along microtubules in Xenopus melanophores: evidence for cooperation between multiple motors.Biophys J 90(1): 318-27, 2006.
2005
- Phosphoinositide specificity of and mechanism of lipid domain formation by annexin A2-p11 heterotetramer.J Biol Chem 280(52): 42831-40, 2005.
- Properties of microfluidic turbulent mixing revealed by fluorescence lifetime imaging.J Chem Phys 123(22): 224504, 2005.
- Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope.Biophys J 89(6): 4275-85, 2005.
- Microfabricated continuous-flow, turbulent, microsecond mixer.Rev Sci Instrum 76: 125103, 2005.
- Measurement of internal movements within the 30 S ribosomal subunit using Förster resonance energy transfer.J Mol Biol 354(2): 459-72, 2005.
- Spectrally resolved neurophotonics: a case report of hemodynamics and vascular components in the mammalian brain.J Biomed Opt 10(6): 064009, 2005.
- Optical characterization of ultrasmall Si nanoparticles prepared through electrochemical dispersion of bulk Si.J Phys Chem B 109(42): 19786-97, 2005.
- Measurements of internal distance changes of the 30S ribosome using FRET with multiple donor-acceptor pairs: quantitative spectroscopic methods.J Mol Biol 351(5): 1123-45, 2005.
- Polar plot representation for frequency-domain analysis of fluorescence lifetimes.J Fluoresc 15(5): 805-15, 2005.
- Measuring fast dynamics in solutions and cells with a laser scanning microscope.Biophys J 89(2): 1317-27, 2005.
- Interaction of human apolipoprotein A-I with model membranes exhibiting lipid domains.Biophys J 89(1): 285-95, 2005.
- Lipid-protein interactions revealed by two-photon microscopy and fluorescence correlation spectroscopy.Acc Chem Res 38(6): 469-77, 2005.
- Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure.Biophys J 88(5): L33-6, 2005.
- Visualization and analysis of apolipoprotein A-I interaction with binary phospholipid bilayers.J Lipid Res 46(4): 669-78, 2005.
- 3-D particle tracking in a two-photon microscope: application to the study of molecular dynamics in cells.Biophys J 88(4): 2919-28, 2005.
- Application of fluorescence correlation spectroscopy to hapten-antibody binding.In Protein–Ligand Interactions (Vol. 305). pp. 415-438, 2005. ISBN 1592599125.
- Reflectance and Transmittance Spectroscopy.In Laser and Current Optical Techniques in Biology (Comprehensive Series in Photochemical & Photobiological Sciences). By G Palumbo and R Pratesi (Editors). Royal Society of Chemistry, pp. 211-258, 2005. ISBN 9780854043217.
- Measurement of brain activity by near-infrared light.J Biomed Opt 10(1): 11008, 2005.
2004
- Partitioning of NaPi cotransporter in cholesterol-, sphingomyelin-, and glycosphingolipid-enriched membrane domains modulates NaPi protein diffusion, clustering, and activity.J Biol Chem 279(47): 49160-71, 2004.
- Polarized fluorescence correlation spectroscopy of DNA-DAPI complexes.Microsc Res Tech 65(4-5): 205-17, 2004.
- Mitigating thermal mechanical damage potential during two-photon dermal imaging.J Biomed Opt 9(6): 1265-70, 2004.
- Age-correlated changes in cerebral hemodynamics assessed by near-infrared spectroscopy.Arch Gerontol Geriatr 39(3): 207-25, 2004.
- Two-photon fluorescence imaging and reactive oxygen species detection within the epidermis.In Epidermal Cells (Vol. 289). pp. 413-422, 2004. ISBN 9781592598304.
- Salt-induced protein resistance of polyelectrolyte brushes studied using fluorescence correlation spectroscopy and neutron reflectometry.Phys Chem Chem Phys 6: 5557–5563, 2004.
- Spatial-temporal studies of membrane dynamics: scanning fluorescence correlation spectroscopy (SFCS).Biophys J 87(2): 1260-7, 2004.
- Partitioning of dual-lipidated peptides into membrane microdomains: lipid sorting vs peptide aggregation.J Am Chem Soc 126(24): 7496-503, 2004.
- Fluorescence depolarization of actin filaments in reconstructed myofibers: the effect of S1 or pPDM-S1 on movements of distinct areas of actin.Biophys J 86(5): 3020-9, 2004.
- Excited states of tetrahedral single-core Si29 nanoparticles.Phys Rev B 69(20): 205319, 2004.
- Conformational flexibility of four-way junctions in RNA.J Mol Biol 336(1): 69-79, 2004.
- Mechanism of protein binding to spherical polyelectrolyte brushes studied in situ using two-photon excitation fluorescence fluctuation spectroscopy.Phys Rev E 69(2): 021401, 2004.
- Single-molecule studies of DNA and RNA four-way junctions.Biochem Soc Trans 32(1): 41-5, 2004.
- Dietary Lutein reduces ultraviolet radiation-induced inflammation and immunosuppression.J Invest Dermatol 122(2): 510–517, 2004.
- The vital contributions of Perrin and Förster.Biophotonics Int 11(9): 42-45, 2004.
- Noninvasive determination of the optical properties of adult brain: near-infrared spectroscopy approach.J Biomed Opt 9(1): 221-9, 2004.
- Distance measurement by circular scanning of the excitation beam in the two-photon microscope.Microsc Res Tech 63(1): 34-49, 2004.
- Conformational changes of actin induced by strong or weak myosin subfragment-1 binding.Tsitologiia 46(8): 719-34, 2004.
- Tubulin equilibrium unfolding followed by time-resolved fluorescence and fluorescence correlation spectroscopy.Protein Sci 13(1): 81-8, 2004.
- Detection of fast neuronal signals in the motor cortex from functional near infrared spectroscopy measurements using independent component analysis.Med Biol Eng Comput 42(1): 92-99, 2004.
2003
- Visualizing lipid structure and raft domains in living cells with two-photon microscopy.Proc Natl Acad Sci USA 100(26): 15554-9, 2003.
- Bioconvertible vitamin antioxidants improve sunscreen photoprotection against UV-induced reactive oxygen species.J Cosmet Sci 54(5): 589-98, 2003.
- Optimization of the signal-to-noise ratio of frequency-domain instrumentation for near-infrared spectro-imaging of the human brain.Opt Express 11(21): 2717-2729, 2003.
- High-pressure fluorescence correlation spectroscopy.Biophys J 85(4): 2711-9, 2003.
- Scanning FCS, a novel method for three-dimensional particle tracking.Biochem Soc Trans 31(Pt 5): 997-1000, 2003.
- Surface-exposed tryptophan residues are essential for O-acetylserine sulfhydrylase structure, function, and stability.J Biol Chem 278(39): 37511-9, 2003.
- A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate.Proc Natl Acad Sci USA 100(16): 9308-13, 2003.
- The roles of changes in deoxyhemoglobin concentration and regional cerebral blood volume in the fMRI BOLD signal.Neuroimage 19(4): 1521-31, 2003.
- Fast cerebral functional signal in the 100-ms range detected in the visual cortex by frequency-domain near-infrared spectrophotometry.Psychophysiology 40(4): 521-8, 2003.
- Fluorescence lifetime imaging for the two-photon microscope: time-domain and frequency-domain methods.J Biomed Opt 8(3): 381-90, 2003.
- Neonatal development of the stratum corneum pH gradient: localization and mechanisms leading to emergence of optimal barrier function.J Invest Dermatol 120(6): 998-1006, 2003.
- The global analysis of fluorescence intensity and anisotropy decay data: second-generation theory and programs.In Topics in Fluorescence Spectroscopy, Volume 2, Principles. By JR Lakowicz (Editors). Springer US, pp. 241-305, 2003. ISBN 9780306438752.
- Localized irregularities in hemoglobin flow and oxygenation in calf muscle in patients with peripheral vascular disease detected with near-infrared spectrophotometry.J Vasc Surg 37(5): 1017-26, 2003.
- Reorientational dynamics of enzymes adsorbed on quartz: a temperature-dependent time-resolved TIRF anisotropy study.Biophys J 84(4): 2533-41, 2003.
- Fluorescence-lifetime imaging techniques for microscopy.In Digital Microscopy. A second edition of "Video Microscopy" (Methods in Cell Biology, Vol. 72). By G Sluder and DE Wolf (Editors). Academic Press, pp. 431-64, 2003. ISBN 9780125641692.
- Absolute frequency-domain pulse oximetry of the brain: methodology and measurements.Adv Exp Med Biol 530: 61-73, 2003.
- Fluorescence correlation spectroscopy.In Biophotonics, Part B (Methods in Enzymology, Vol. 361). By G Marriott and I Parker (Editors). Academic Press, pp. 69-92, 2003. ISBN 9780121822644.
- Giant vesicles, Laurdan, and two-photon fluorescence microscopy: evidence of lipid lateral separation in bilayers.In Biophotonics, Part A (Methods in Enzymology, Vol. 360). By G Marriott and I Parker (Editors). Academic Press, pp. 481-500, 2003. ISBN 9780121822637.
- Mapping of hemodynamics on the human calf with near infrared spectroscopy and the influence of the adipose tissue thickness.In Oxygen Transport to Tissue XXIII: Oxygen Measurements in the 21st Century: Basic Techniques and Clinical Relevance (Advances in Experimental Medicine and Biology, Vol. 510). By DF Wilson, SM Evans, J Biaglow, and A Pastuszko (Editors). Springer, pp. 225-30, 2003. ISBN 9780306473944.
- Detection of the fast neuronal signal on the motor cortex using functional frequency domain near infrared spectroscopy.In Oxygen Transport to Tissue XXIII: Oxygen Measurements in the 21st Century: Basic Techniques and Clinical Relevance (Advances in Experimental Medicine and Biology, Vol. 510). By DF Wilson, SM Evans, J Biaglow, and A Pastuszko (Editors). Springer, pp. 193-7, 2003. ISBN 9780306473944.
- Camptothecin poly[n-(2-hydroxypropyl) methacrylamide] copolymers in antitopoisomerase-I tumor therapy: intratumor release and antitumor efficacy.Mol Cancer Ther 2(1): 29-40, 2003.
- Fluorescence lifetime-resolved imaging: measuring lifetimes in an image.In Biophotonics, Part A (Methods in Enzymology, Vol. 360). By G Marriott and I Parker (Editors). Academic Press, pp. 509-42, 2003. ISBN 9780121822637.
- Liposomes in the study of phospholipase A2 activity.In Liposomes, Part B (Methods in Enzymology, Vol. 372). By N Duzgunes (Editors). Academic Press, pp. 19-48, 2003. ISBN 9780121822750.
- Diminished cerebral circulatory autoregulation in obstructive sleep apnea investigated by near-infrared spectroscopy.Sleep Research Online 5(4): 123-132, 2003.
2002
- NHE1 regulates the stratum corneum permeability barrier homeostasis. Microenvironment acidification assessed with fluorescence lifetime imaging.J Biol Chem 277(49): 47399-406, 2002.
- Functional frequency-domain near-infrared spectroscopy detects fast neuronal signal in the motor cortex.Neuroimage 17(4): 1868-75, 2002.
- Cellular characterization of adenylate kinase and its isoform: two-photon excitation fluorescence imaging and fluorescence correlation spectroscopy.Biophys J 83(6): 3177-87, 2002.
- Relationship between erythrocyte membrane phase properties and susceptibility to secretory phospholipase A2.Biochemistry 41(47): 13982-8, 2002.
- Binding of ethidium to yeast tRNA(Phe): A new perspective on an old Bromide.In Fluorescence Spectroscopy, Imaging and Probes. By R Kraayenhof, AJWG Visser, and HC Gerritsen (Editors). Springer-Verlag Berlin, Heidelberg, New York, pp. 111-121, 2002. ISBN 9783540427681.
- Two-photon fluorescence lifetime imaging of the skin stratum corneum pH gradient.Biophys J 83(3): 1682-90, 2002.
- Different time evolution of oxyhemoglobin and deoxyhemoglobin concentration changes in the visual and motor cortices during functional stimulation: a near-infrared spectroscopy study.Neuroimage 16(3 Pt 1): 704-12, 2002.
- Modulation of concentration fluctuations in phase-separated lipid membranes by polypeptide insertion.Biophys J 83(1): 334-44, 2002.
- Observation and quantification of ultraviolet-induced reactive oxygen species in ex vivo human skin.Photochem Photobiol 76(1): 57-63, 2002.
- Unfolding of pyridoxal 5'-phosphate-dependent O-acetylserine sulfhydrylase probed by time-resolved tryptophan fluorescence.Biochim Biophys Acta 1596(1): 47-54, 2002.
- A two-photon view of an enzyme at work: Crotalus atrox venom PLA2 interaction with single-lipid and mixed-lipid giant unilamellar vesicles.Biophys J 82(4): 2232-43, 2002.
- Three-dimensional cellular deformation analysis with a two-photon magnetic manipulator workstation.Biophys J 82(4): 2211-23, 2002.
- Ligand binding to somatostatin receptors induces receptor-specific oligomer formation in live cells.Proc Natl Acad Sci USA 99(5): 3294-9, 2002.
- Interaction of apolipoprotein A-I in three different conformations with palmitoyl oleoyl phosphatidylcholine vesicles.J Lipid Res 43(2): 187-97, 2002.
- Base-sequence specificity of Hoechst 33258 and DAPI binding to five (A/T)4 DNA sites with kinetic evidence for more than one high-affinity Hoechst 33258-AATT complex.J Mol Biol 315(5): 1049-61, 2002.
- Surface Diffusion of Poly(ethylene glycol).Macromolecules 35(5): 1776-1784, 2002.
- Molecular brightness characterization of EGFP in vivo by fluorescence fluctuation spectroscopy.Biophys J 82(1): 133-44, 2002.
- FRET tells us about proximities, distances, orientations and dynamic properties.J Biotechnol 82(3): 177-9, 2002.