DNA Curvature Analysis by Christoph Gohlke

Curvature Models

AA Wedge

Rise    3.38
Oligo   AA     AG     AC     AT     GA     GG     GC     CA     CG     TA
Twist   35.62  27.70  34.40  31.50  36.90  33.67  40.00  34.50  29.80  36.00
Roll    -8.40   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
Tilt     2.40   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00

Bolshoi & Trifonov

Rise    3.38
Oligo   AA     AG     AC     AT     GA     GG     GC     CA     CG     TA
Twist   35.62  27.70  34.40  31.50  36.90  33.67  40.00  34.50  29.80  36.00
Roll    -6.50   8.40  -0.90   2.60  -2.70   1.20  -5.00   1.60   6.70   0.90
Tilt     3.20  -0.30  -0.70   0.00  -4.60  -1.80   0.00   3.10   0.00   0.00

Cacchione & De Santis

Rise    3.38
Oligo   AA     AG     AC     AT     GA     GG     GC     CA     CG     TA
Twist   35.90  35.60  34.60  35.00  35.80  33.00  33.30  34.50  33.70  34.60
Roll    -5.40   1.00  -2.40  -7.30   2.00   1.30  -3.70   6.70   4.60   8.00
Tilt    -0.50  -1.60  -2.70   0.00  -1.70  -0.60   0.00   0.40   0.00   0.00

Calladine & Drew

Rise    3.38
Oligo   AA     AG     AC     AT     GA     GG     GC     CA     CG     TA
Twist   35.00  34.00  34.00  34.00  34.00  34.00  34.00  34.00  34.00  34.00
Roll     0.00   3.30   3.30   3.30   3.30   3.30   3.30   3.30   3.30   6.60
Tilt     0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00

DNAse I Consensus

Rise    3.40
Oligo   AAA    AAG    AAC    AAT    AGA    AGG    AGC    AGT    ACA    ACG
        ACC    ACT    ATA    ATG    ATC    ATT    GAA    GAG    GAC    GAT
        GGA    GGG    GGC    GGT    GCA    GCG    GCC    GCT    GTA    GTG
        GTC    GTT    CAA    CAG    CAC    CAT    CGA    CGG    CGC    CGT
        CCA    CCG    CCC    CCT    CTA    CTG    CTC    CTT    TAA    TAG
        TAC    TAT    TGA    TGG    TGC    TGT    TCA    TCG    TCC    TCT
        TTA    TTG    TTC    TTT
Twist   36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00
        36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00
        36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00
        36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00
        36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00
        36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00  36.00
        36.00  36.00  36.00  36.00
Roll     0.05   4.70   2.65   0.35   4.90   5.05   6.90   3.90   5.50   5.30
         5.30   3.90   6.25   7.70   4.45   0.35   4.05   6.00   5.50   4.45
         5.00   5.85   9.10   5.30   6.75   5.90   9.10   6.90   5.05   6.65
         5.50   2.65   4.75   6.90   6.65   7.70   7.05   3.85   5.90   5.30
         3.05   3.85   5.85   5.05   5.00   6.90   6.00   4.70   4.65   5.00
         5.05   6.25   7.70   3.05   6.75   5.50   7.70   7.05   5.00   4.90
         4.65   4.75   4.05   0.05
Tilt     0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00

Nucleosome Positioning

Rise    3.38
Oligo   AAA    AAG    AAC    AAT    AGA    AGG    AGC    AGT    ACA    ACG
        ACC    ACT    ATA    ATG    ATC    ATT    GAA    GAG    GAC    GAT
        GGA    GGG    GGC    GGT    GCA    GCG    GCC    GCT    GTA    GTG
        GTC    GTT    CAA    CAG    CAC    CAT    CGA    CGG    CGC    CGT
        CCA    CCG    CCC    CCT    CTA    CTG    CTC    CTT    TAA    TAG
        TAC    TAT    TGA    TGG    TGC    TGT    TCA    TCG    TCC    TCT
        TTA    TTG    TTC    TTT
Twist   34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30
        34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30
        34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30
        34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30
        34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30
        34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30  34.30
        34.30  34.30  34.30  34.30
Roll     0.00   5.20   3.70   0.70   3.30   5.40   7.50   5.80   5.20   5.40
         5.40   5.80   2.80   6.70   5.30   0.70   3.00   5.40   5.40   5.30
         3.80   6.00  10.00   5.40   5.40   7.50  10.00   7.50   3.70   6.50
         5.40   3.70   3.30   4.20   6.50   6.70   8.30   4.70   7.50   5.40
         5.40   4.70   6.00   5.40   2.20   4.20   5.40   5.20   2.00   2.20
         3.70   2.80   5.40   5.40   6.00   5.20   5.40   8.30   3.80   3.30
         2.00   3.30   3.00   0.00
Tilt     0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
         0.00   0.00   0.00   0.00

Reversed Calladine & Drew

Rise    3.38
Oligo   AA     AG     AC     AT     GA     GG     GC     CA     CG     TA
Twist   35.00  34.00  34.00  34.00  34.00  34.00  34.00  34.00  34.00  34.00
Roll     3.30   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00  -3.30
Tilt     0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00

Straight

Rise    3.38
Oligo   AA     AG     AC     AT     GA     GG     GC     CA     CG     TA
Twist   34.29  34.29  34.29  34.29  34.29  34.29  34.29  34.29  34.29  34.29
Roll     0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00
Tilt     0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00

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