Laboratory for Fluorescence Dynamics

A NIH research center for biomedical fluorescence spectroscopy at the University of California, Irvine

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The Laboratory for Fluorescence Dynamics' (LFD) database of publications contains more than 2200 journal articles, book chapters, conference proceedings, abstracts, patents, and theses by members of the LFD, and also selected publications of interest to the fluorescence community.
Electronic documents are not available publicly due to copyright restrictions. Reprints can be requested from the authors.

Recent LFD Publications

2020

  1. Greco CM, Cervantes M, Fustin JM, Ito K, Ceglia N, Samad M, Shi J, Koronowski KB, Forne I, Ranjit S, Gaucher J, Kinouchi K, Kojima R, Gratton E, Li W, Baldi P, Imhof A, Okamura H, Sassone-Corsi P.
    S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling.
    Sci Adv. 2020; 6(51), eabc5629.
  2. Vallmitjana A, Torrado B, Dvornikov A, Ranjit S, Gratton E.
    Blind resolution of lifetime components in individual pixels of fluorescence lifetime images using the phasor approach.
    J Phys Chem B. 2020; 124(45): 10126-10137.
  3. Makaremi S, Rose M, Ranjit S, Digman MA, Bowdish DME, Moran-Mirabal JM.
    Lateral diffusion of CD14 and TLR2 in macrophage plasma membrane assessed by raster image correlation spectroscopy and single particle tracking.
    Sci Rep. 2020; 10(1): 19375. PMCID: PMC7652837
  4. Ranjit S, Henriksen K, Dvornikov A, Delsante M, Rosenberg A, Levi M, Gratton E.
    Phasor approach to autofluorescence lifetime imaging FLIM can be a qantitative biomarker of chronic renal Parenchymal injury.
    Kidney Int. 2020; 98(5): 1341-1346. PMCID: PMC7606347
  5. Chen YC, Sood C, Marin M, Aaron J, Gratton E, Salaita K, Melikyan GB.
    Super-resolution fluorescence imaging reveals that Serine incorporator protein 5 inhibits human immunodeficiency virus fusion by disrupting envelope glycoprotein clusters.
    ACS Nano. 2020; 14(9): 10929-10943.
  6. Hedde PN, Abram TJ, Jain A, Nakajima R, de Assis RR, Pearce T, Jasinskas A, Toosky MN, Khan S, Felgner PL, Gratton E, Zhao W.
    A modular microarray imaging system for highly specific COVID-19 antibody testing.
    Lab Chip. 2020; 20(18): 3302-3309. PMCID: PMC7263497
  7. Ranjit S, Lanzanò L, Libby AE, Gratton E, Levi M.
    Advances in fluorescence microscopy techniques to study kidney function.
    Nat Rev Nephrol. 2020; [Online ahead of print].
  8. Harris CR, Millman KJ, van der Walt SJ, Gommers R, Virtanen P, Cournapeau D, Wieser E, Taylor J, Berg S, Smith NJ, Kern R, Picus M, Hoyer S, van Kerkwijk MH, Brett M, Haldane A, Río JFd, Wiebe M, Peterson P, Gérard-Marchant P, Sheppard K, Reddy T, Weckesser W, Abbasi H, Gohlke C, Oliphant TE.
    Array programming with NumPy.
    Nature. 2020; 585(7825): 357-362.
  9. Palczewska G, Boguslawski J, Stremplewsk P, Kornaszewski L, Zhang J, Dong Z, Liang XX, Gratton E, Vogel A, Wojtkowski M, Palczewski K.
    Noninvasive two-photon optical biopsy of retinal fluorophores.
    Proc Natl Acad Sci USA. 2020; 117(36): 22532-22543. PMCID: PMC7486747
  10. Li W, Hu J, Sh B, Palomba F, Digman MA, Gratton E, Jiang H.
    Biophysical properties of AKAP95 protein condensates regulate splicing and tumorigenesis.
    Nat Cell Biol. 2020; 22(8): 960-972. PMCID: PMC7425812
  11. Hedde PN, Bouzin M, Abram TJ, Chen X, Toosky MN, Vu T, Li Y, Zhao W, Gratton E.
    Rapid isolation of rare targets from large fluid volumes.
    Sci Rep. 2020; 10(1), 12458. PMCID: PMC7385493
  12. Nguyen DG.
    Fluorescence lifetime imaging microscopy and LAURDAN spectral imaging for dynamically investigating osteoclast differentiation.
    PhD in Biomedical Engineering, University of California, Irvine, 2020.
    Advisor: Michelle A Digman
  13. Leemans SW.
    Fluorescence based adaptive optics and multidimensional fluorescence microscopy.
    PhD in Biomedical Engineering, University of California, Irvine, 2020.
    Advisor: Enrico Gratton
  14. Cervantes M, Forné I, Ranjit S, Gratton E, Imhof A, Sassone-Corsi P.
    BMAL1 associates with NOP58 in the nucleolus and contributes to pre-rRNA processing.
    iScience. 2020; 23(6), 101151. PMCID: PMC7256328
  15. Vallmitjana A, Dvornikov A, Torrado B, Jameson DM, Ranjit S, Gratton E.
    Resolution of 4 components in the same pixel in FLIM images using the phasor approach.
    Methods Appl Fluoresc. 2020; 8(3), 035001.
  16. Takahashi S, Luo Y, Ranjit S, Xie C, Libby AE, Orlicky DJ, Dvornikov A, Wang XX, Myakala K, Jones BA, Bhasin K, Wang D, McManaman JL, Krausz KW, Gratton E, Ir D, Robertson CE, Frank DN, Gonzalez FJ, Levi M.
    Bile acid sequestration reverses liver injury and prevents progression of NASH in western diet-fed mice.
    J Biol Chem. 2020; 295(14): 4733-4747. PMCID: PMC7135973
  17. Sameni S, Zhang R, Digman MA.
    The phasor FLIM method reveals a link between a change in energy metabolism and mHtt protein spread in healthy mammalian cells when co-cultured with Huntington diseased cells.
    Methods Appl Fluoresc. 2020; [Epub ahead of print].
  18. Pascua SM, McGahey GE, Ma N, Wang JJ, Digman MA.
    Caffeine and Cisplatin effectively targets the metabolism of a triple-negative breast cancer cell line assessed via Phasor-FLIM.
    Int J Mol Sci. 2020; 21(7), E2443. PMCID: PMC7177700
  19. Haensel D, Jin S, Sun P, Cinco R, Dragan M, Nguyen Q, Cang Z, Gong Y, Vu R, MacLean AL, Kessenbrock K, Gratton E, Nie Q, Dai X.
    Defining epidermal basal cell states during skin homeostasis and wound healing using single-cell transcriptomics.
    Cell Rep. 2020; 30(11): 3932-3947.e6. PMCID: PMC7218802
  20. Liang Z, Lou J, Scipioni L, Gratton E, Hinde E.
    Quantifying nuclear wide chromatin compaction by phasor analysis of histone Förster resonance energy transfer (FRET) in frequency domain fluorescence lifetime imaging microscopy (FLIM) data.
    Data Brief. 2020; 30, 105401. PMCID: PMC7152662
  21. Perinbam K, Chacko JV, Kannan A, Digman MA, Siryaporn A.
    A shift in central metabolism accompanies virulence activation in Pseudomonas aeruginosa.
    mBio. 2020; 11(2), e02730-18. PMCID: PMC7064766
  22. Davis RT, Blake K, Ma D, Gabra MBI, Hernandez GA, Phung AT, Yang Y, Maurer D, Lefebvre AEYT, Alshetaiwi H, Xiao Z, Liu J, Locasale JW, Digman MA, Mjolsness E, Kong M, Werb Z, Lawson DA.
    Transcriptional diversity and bioenergetic shift in human breast cancer metastasis revealed by single-cell RNA sequencing.
    Nat Cell Biol. 2020; 22(3): 310-320.
  23. Titlow J, Robertson F, Järvelin A, Ish-Horowicz D, Smith C, Gratton E, Davis I.
    Syncrip/hnRNP Q is required for activity-induced Msp300/Nesprin-1 expression and new synapse formation.
    J Cell Biol. 2020; 219(3), e201903135. PMCID: PMC7055005
  24. Tetreau G, Banneville AS, Andreeva EA, Brewster AS, Hunter MS, Sierra RG, Teulon JM, Young ID, Burke N, Grünewald TA, Beaudouin J, Snigireva I, Fernandez-Luna MT, Burt A, Park HW, Signor L, Bafna JA, Sadir R, Fenel D, Boeri-Erba E, Bacia M, Zala N, Laporte F, Després L, Weik M, Boutet S, Rosenthal M, Coquelle N, Burghammer M, Cascio D, Sawaya MR, Winterhalter M, Gratton E, Gutsche I, Federici B, Pellequer JL, Sauter NK, Colletier JP.
    Serial femtosecond crystallography on in vivo-grown crystals drives elucidation of mosquitocidal Cyt1Aa bioactivation cascade.
    Nat Commun. 2020; 11(1): 1153. PMCID: PMC7052140
  25. Abram TJ, Cherukury H, Ou CY, Vu T, Toledano M, Li Y, Grunwald JT, Toosky MN, Tifrea DF, Slepenkin A, Chong J, Kong L, Pozo DVD, La KT, Labanieh L, Zimak J, Shen B, Huang SS, Gratton E, Peterson EM, Zhao W.
    Rapid bacterial detection and antibiotic susceptibility testing in whole blood using one-step, high throughput blood digital PCR.
    Lab Chip. 2020; 20(3): 477-489. PMCID: PMC7250044
  26. Palomba F, Scipioni L, Gratton E, Digman MA.
    Water dynamics of a model protein phase separation via fluorescence lifetime and spectral analysis of ACDAN.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 308a, 1509-Pos.
  27. Torrado B, Scipioni L, Gratton E, Badano JL, Malacrida LS, Irigoín F.
    Primary cilium submicron organization and dynamics.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 437a, 2144-Pos.
  28. Hedde PN, Staaf E, Singh SB, Johansson S, Gratton E.
    Pair correlation analysis reveals barriers to natural killer cell receptor motion at the synapse.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 246a, 1211-Pos.
  29. Oneto M, Scipioni L, Sarmento M, Cainero I, Cerutti E, Pelicci S, Furia L, Pelicci PG, Dellino GI, Bianchini P, Faretta M, Gratton E, Diaspro A, Lanzano L.
    Nanoscale distribution of nuclear sites analyzed by superresolution STED image cross-correlation spectroscopy.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 20a, 93-Plat.
  30. Hsu C, Gratton E, Anders R, Rosenberg A, Levi M, Ranjit S.
    Image correlation microscopy approach to study collagen accumulation for distinguishing recurrence in liver cancer patients.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 309a-310a, 1514-Pos.
  31. Vallmitjana A, Vorontsova I, Torrado B, Schilling TF, Hall JE, Gratton E, Malacrida LS.
    Measuring the spatial distribution of dipolar relaxation in live Zebrafish eye lenses during development.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 308a, 1508-Pos.
  32. Tedeschi G, Scipioni L, Abbott G, Digman MA.
    Dynamic characterization of KCNQ1 and its regulatory subunits revealed by fluorescence fluctuation techniques.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 262a, 1285-Pos.