Laboratory for Fluorescence Dynamics

A NIH research center for biomedical fluorescence spectroscopy at the University of California, Irvine

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The Laboratory for Fluorescence Dynamics' (LFD) database of publications contains more than 2200 journal articles, book chapters, conference proceedings, abstracts, patents, and theses by members of the LFD, and also selected publications of interest to the fluorescence community.
Electronic documents are not available publicly due to copyright restrictions. Reprints can be requested from the authors.

Recent LFD Publications

2020

  1. Titlow J, Robertson F, Järvelin A, Ish-Horowicz D, Smith C, Gratton E, Davis I.
    Syncrip/hnRNP Q is required for activity-induced Msp300/Nesprin-1 expression and new synapse formation.
    J Cell Biol. 2020; 219(3), e201903135.
  2. Takahashi S, Luo Y, Ranjit S, Xie C, Libby AE, Orlicky DJ, Dvornikov A, Wang XX, Myakala K, Jones BA, Bhasin K, Wang D, McManaman JL, Krausz KW, Gratton E, Ir D, Robertson CE, Frank DN, Gonzalez FJ, Levi M.
    Bile acid sequestration reverses liver injury and prevents progression of NASH in western diet-fed mice.
    J Biol Chem. 2020; [Epub ahead of print].
  3. Palomba F, Scipioni L, Gratton E, Digman MA.
    Water dynamics of a model protein phase separation via fluorescence lifetime and spectral analysis of ACDAN.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 308a, 1509-Pos.
  4. Torrado B, Scipioni L, Gratton E, Badano JL, Malacrida LS, Irigoín F.
    Primary cilium submicron organization and dynamics.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 437a, 2144-Pos.
  5. Hedde PN, Staaf E, Singh SB, Johansson S, Gratton E.
    Pair correlation analysis reveals barriers to natural killer cell receptor motion at the synapse.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 246a, 1211-Pos.
  6. Oneto M, Scipioni L, Sarmento M, Cainero I, Cerutti E, Pelicci S, Furia L, Pelicci PG, Dellino GI, Bianchini P, Faretta M, Gratton E, Diaspro A, Lanzano L.
    Nanoscale distribution of nuclear sites analyzed by superresolution STED image cross-correlation spectroscopy.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 20a, 93-Plat.
  7. Hsu C, Gratton E, Anders R, Rosenberg A, Levi M, Ranjit S.
    Image correlation microscopy approach to study collagen accumulation for distinguishing recurrence in liver cancer patients.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 309a-310a, 1514-Pos.
  8. Vallmitjana A, Vorontsova I, Torrado B, Schilling TF, Hall JE, Gratton E, Malacrida LS.
    Measuring the spatial distribution of dipolar relaxation in live Zebrafish eye lenses during development.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 308a, 1508-Pos.
  9. Tedeschi G, Scipioni L, Abbott G, Digman MA.
    Dynamic characterization of KCNQ1 and its regulatory subunits revealed by fluorescence fluctuation techniques.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 262a, 1285-Pos.
  10. Lefebvre AEYT, Adame FA, Liu M, Digman MA.
    Non-destructively analyzing the metabolic dysregulation of Invasive cancer cells on an intracellular scale.
    64th Annual Meeting of the Biophysical Society. San Diego, California. February 15-19, 2020.
    Biophys J. 2020; 118(3, Suppl 1): 307a, 1505-Pos.
  11. Sameni S, Zhang R, Digman MA.
    Number and molecular brightness analysis reveals Htt25Q protein aggregation upon the uptake of Htt97Q aggregates.
    Biochem Biophys Res Commun. 2020; 522(1): 133-137.
  12. Pedrote MM, Motta MF, Ferretti GDS, Norberto DR, Spohr TCLS, Lima FRS, Gratton E, Silva JL, de Oliveira GAP.
    Oncogenic gain of function in Glioblastoma is linked to mutant p53 Amyloid oligomers.
    iScience. 2020; 23(2), 100820. PMCID: PMC6976948
  13. Castro-Castillo V, Gajardo J, Sandoval-Altamirano C, Gratton E, Sanchez S, Malacrida L, Gunther G.
    CAPRYDAA, an anthracene dye analog to LAURDAN: a comparative study using cuvette and microscopy.
    J Mater Chem B. 2020; 8(1).

2019

  1. Hedde PN, Staaf E, Singh SB, Johansson S, Gratton E.
    Pair correlation analysis maps the dynamic two-dimensional organization of natural killer cell receptors at the synapse.
    ACS Nano. 2019; 13(2): 14274-14282.
  2. Abram TJ, Cherukury H, Ou CY, Vu T, Toledano M, Li Y, Grunwald JT, Toosky MN, Tifrea DF, Slepenkin A, Chong J, Kong L, Pozo DVD, La KT, Labanieh L, Zimak J, Shen B, Huang SS, Gratton E, Peterson EM, Zhao W.
    Rapid bacterial detection and antibiotic susceptibility testing in whole blood using one-step, high throughput blood digital PCR.
    Lab Chip. 2019; [Epub ahead of print].
  3. Planes N, Vanderheyden PPML, Gratton E, Caballero-George C.
    Image mean square displacement to study the lateral mobility of Angiotensin II type 1 and Endothelin 1 type A receptors on living cells.
    Microsc Res Tech. 2019; [Epub ahead of print].
  4. Sitiwin E, Madigan MC, Gratton E, Cherepanoff S, Conway RM, Whan R, Macmillan A.
    Shedding light on melanins within in situ human eye melanocytes using 2-photon microscopy profiling techniques.
    Sci Rep. 2019; 9(1), 18585. PMCID: PMC6901595
  5. Oneto M, Scipioni L, Sarmento MJ, Cainero I, Pelicci S, Furia L, Pelicci PG, Dellino GI, Bianchini P, Faretta M, Gratton E, Diaspro A, Lanzanò L.
    Nanoscale distribution of nuclear sites by super-resolved image cross-correlation spectroscopy.
    Biophys J. 2019; 117(11): 2054-2065. PMCID: PMC6895719
  6. Ranjit S, Datta R, Dvornikov AS, Gratton E.
    Multicomponent analysis of phasor plot in a single pixel to calculate changes of metabolic trajectory in biological systems.
    J Phys Chem A. 2019; 123(45): 9865-9873.
  7. Ranjit S, Malacrida L, Stakic M, Gratton E.
    Determination of the metabolic index using the fluorescence lifetime of free and bound NADH in the phasor approach.
    J Biophotonics. 2019; 12(11), e201900156. PMCID: PMC6842045
  8. Gabriel M, Anzalone A, Gratton E, Estrada LC.
    A tracking-based nanoimaging method for fast detection of surfaces' inhomogeneities using gold nanoparticles.
    Microsc Res Tech. 2019; 82(11): 1835-1842.
  9. Murata MM, Kong X, Moncada E, Chen Y, Imamura H, Wang P, Berns MW, Yokomori K, Digman MA.
    NAD+ consumption by PARP1 in response to DNA damage triggers metabolic shift critical for damaged cell survival.
    Mol Biol Cell. 2019; 30(20): 2584-2597. PMCID: PMC6740200
  10. Ma N, de Mochel NR, Pham PD, Yoo TY, Cho KWY, Digman MA.
    Label-free assessment of pre-implantation embryo quality by the Fluorescence Lifetime Imaging Microscopy (FLIM)-phasor approach.
    Sci Rep. 2019; 9(1), 13206. PMCID: PMC6744410
  11. Trivedi P, Palomba F, Niedzialkowska E, Digman MA, Gratton E, Stukenberg PT.
    The inner centromere is a biomolecular condensate scaffolded by the chromosomal passenger complex.
    Nat Cell Biol. 2019; 21(9): 1127-1137.
  12. Dong Y, Sameni S, Digman MA, Brewer GJ.
    Reversibility of age-related oxidized free NADH redox states in Alzheimer's disease neurons by imposed external Cys/CySS redox shifts.
    Sci Rep. 2019; 9(1), 11274. PMCID: PMC6677822
  13. Levi M, Gratton E, Forster IC, Hernando N, Wagner CA, Biber J, Sorribas V, Murer H.
    Mechanisms of phosphate transport.
    Nat Rev Nephrol. 2019; 15(8): 482-500.
  14. Pasin S.
    The spectral phasor approach as a potential diagnostic tool for breast cancer.
    Master in Biomedical Engineering, University of California, Irvine, 2019.
    Advisor: Enrico Gratton
  15. Ma N.
    Assessment of embryo health and circulating tumor cell metabolism using the phasor-FLIM approach.
    PhD in Biomedical Engineering, University of California, Irvine, 2019.
    Advisor: Michelle A Digman
  16. Dvornikov A, Malacrida L, Gratton E.
    The DIVER microscope for imaging in scattering media.
    Methods Protoc. 2019; 2(2): 53. PMCID: PMC6632175
  17. Polyzos AA, Lee DY, Datta R, Hauser M, Budworth H, Holt A, Mihalik S, Goldschmidt P, Frankel K, Trego K, Bennett MJ, Vockley J, Xu K, Gratton E, McMurray CT.
    Metabolic reprogramming in astrocytes distinguishes region-specific neuronal susceptibility in Huntington mice.
    Cell Metab. 2019; 29(6): 1258-1273. PMCID: PMC6583797
  18. Rodriguez-Agudo D, Malacrida L, Kakiyama G, Sparrer T, Fortes C, Maceyka M, Sublerh MA, Windle JJ, Gratton E, Pandak WM, Gil G.
    StarD5: an ER stress protein regulates plasma membrane and intracellular cholesterol homeostasis.
    J Lipid Res. 2019; 60(6): 1087-1098. PMCID: PMC6547630
  19. Chen H, Ma N, Kagawa K, Kawahito S, Digman M, Gratton E.
    Widefield multifrequency fluorescence lifetime imaging using a two-tap complementary metal-oxide semiconductor camera with lateral electric field charge modulators.
    J Biophotonics. 2019; 12(5), e201800223.