Laboratory for Fluorescence Dynamics

A NIH research center for biomedical fluorescence spectroscopy at the University of California, Irvine

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Publications

The Laboratory for Fluorescence Dynamics' (LFD) database of publications contains more than 2200 journal articles, book chapters, conference proceedings, abstracts, patents, and theses by members of the LFD, and also selected publications of interest to the fluorescence community.
Electronic documents are not available publicly due to copyright restrictions. Reprints can be requested from the authors.

Recent LFD Publications

2018

  1. Ranjit S, Malacrida L, Gratton E.
    Differences between FLIM phasor analyses for data collected with the Becker and Hickl SPC830 card and with the FLIMbox card.
    Microsc Res Tech. 2018; [Epub ahead of print].
  2. Ranjit S, Malacrida L, Jameson DM, Gratton E.
    Fit-free analysis of fluorescence lifetime imaging data using the phasor approach.
    Nat. Protoc. 2018; 13(9): 1979-2004.
  3. Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Adariani SR, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, Gebhardt C, Götz M, Gouridis G, Gratton E, Ha T, Hao P, Hanke CA, Hartmann A, Hendrix J, Hildebrandt LL, Hirschfeld V, Hohlbein J, Hua B, Hübner CG, Kallis E, Kapanidis AN, Kim JY, Krainer G, Lamb DC, Lee NK, Lemke EA, Levesque B, Levitus M, McCann JJ, Naredi-Rainer N, Nettels D, Ngo T, Qiu R, Robb NC, Röcker C, Sanabria H, Schlierf M, Schröder T, Schuler B, Seidel H, Streit L, Thurn J, Tinnefeld P, Tyagi S, Vandenberk N, Vera AM, Weninger KR, Wünsch B, Yanez-Orozco IS, Michaelis J, Seidel CAM, Craggs TD, Hugel T.
    Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study.
    Nat Methods. 2018; 15(9): 669-676. PMCID: PMC6121742
  4. Pedrote MM, de Oliveira GAP, Felix AL, Mota MF, de Marques MA, Soares IN, Iqbal A, Norberto DR, Gomes AMO, Gratton E, Cino EA, Silva JL.
    Aggregation-primed molten globule conformers of the p53 core domain provide potential tools for studying p53C aggregation in cancer.
    J Biol Chem. 2018; 293(29): 11374-11387. PMCID: PMC6065177
  5. Dvornikov A, Gratton E.
    Hyperspectral imaging in highly scattering media by the spectral phasor approach using two filters.
    Biomed Opt Express. 2018; 9(8): 3503-3511. PMCID: PMC6191637
  6. Kim SM, Nguyen TT, Ravi A, Kubiniok P, Finicle BT, Jayashankar V, Malacrida L, Hou J, Robertson J, Gao D, Chernoff J, Digman MA, Potma EO, Tromberg BJ, Thibault P, Edinger AL.
    PTEN deficiency and AMPK activation promote nutrient scavenging and anabolism in prostate cancer cells.
    Cancer Discov. 2018; 8(7): 866-883. PMCID: PMC6030497
  7. Hadraba D, Lopot F, Paesen R, Ameloot M, Jelen K, Digman MA.
    Mechanical testing of connective tissue from nano to macro.
    19th Annual UC Systemwide Bioengineering Symposium. Riverside, CA. June 21-23, 2018.
    UCR BIEN Symposium Complete ABSTRACT Book. 2018; 1: 108.
  8. Trinh AL, Chen H, Chen Y, Hu Y, Li Z, Siegel ER, Linskey ME, Wang PH, Zhou YH, Digman MA.
    Distinguishing stem-like tumor-initiating cells in malignant glioma by phasor fluorescence lifetime imaging.
    19th Annual UC Systemwide Bioengineering Symposium. Riverside, CA. June 21-23, 2018.
    UCR BIEN Symposium Complete ABSTRACT Book. 2018; 1: 113.
  9. Rahim MK, Gratton E, Haun JB.
    Transforming FLIM into a high-content molecular analysis platform.
    19th Annual UC Systemwide Bioengineering Symposium. Riverside, CA. June 21-23, 2018.
    UCR BIEN Symposium Complete ABSTRACT Book. 2018; 1: 69.
  10. Malacrida L, Gratton E.
    LAURDAN fluorescence and phasor plots reveal the effects of a H2O2 bolus in NIH-3T3 fibroblast membranes dynamics and hydration.
    Free Radic Biol Med. 2018; [Epub ahead of print].
  11. Mah EJ.
    Nanoscale changes for macroscale results: modulation of cancer metabolism and adhesion by the substrate.
    PhD in Chemical and Biochemical Engineering, University of California, Irvine, 2018.
    Advisor: Michelle A Digman
  12. Davey RJ, Digman MA, Gratton E, Moens PDJ.
    Quantitative image mean squared displacement (iMSD) analysis of the dynamics of Profilin 1 at the membrane of live cells.
    Methods. 2018; 140-141: 119-125. PMCID: PMC5995621
  13. Malacrida L, Rao E, Gratton E.
    Comparison between iMSD and 2D-pCF analysis for molecular motion studies on in vivo cells: the case of the epidermal growth factor receptor.
    Methods. 2018; 140-141: 74-84. PMCID: PMC5999564
  14. Lee DH, Li X, Ma N, Digman MA, Lee AP.
    Rapid and label-free identification of single leukemia cells from blood in a high-density microfluidic trapping array by fluorescence lifetime imaging microscopy.
    Lab Chip. 2018; 18(9): 1349-1358.
  15. Sameni S.
    Multiphoton imaging and phasor approach to identify new biomarkers in Huntington Disease.
    PhD in Biomedical Engineering, University of California, Irvine, 2018.
    Advisor: Michelle A Digman
  16. Gratton E.
    Spectroscopic signatures of cells metabolism and extracellular species using phasor-FLIM (Conference Presentation).
    BiOS 2018. Part of SPIE Photonics West. San Francisco, California, January 27 - February 1, 2018.
    Multiphoton Microscopy in the Biomedical Sciences XVIII (Vol. 10498). 1049803, 2018.
  17. Kobylkevich BM, Sarkar A, Carlberg BR, Huang L, Ranjit S, Graham DM, Messerli MA.
    Reversing the direction of galvanotaxis with controlled increases in boundary layer viscosity.
    Phys Biol. 2018; 15(3): 036005. PMCID: PMC5970543
  18. Staaf E, Hedde PN, Singh SB, Piguet J, Gratton E, Johansson S.
    Educated natural killer cells show dynamic movement of the activating receptor NKp46 and confinement of the inhibitory receptor Ly49A.
    Sci Signal. 2018; 11(517), eaai9200. PMCID: PMC5925740
  19. Leemans SW, Dvornikov A, Gratton E.
    Adaptive optics in deep tissue microscopy.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 533a, 2638-Pos.
  20. Scipioni L, Diaspro A, Lanzanò L, Gratton E.
    AiryScan comprehensive superresolution correlation analysis.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 533a, 2641-Pos.
  21. Malacrida LS, Hedde PN, Ranjit S, Cardarelli F, Gratton E.
    Elucidating invisible barriers and obstacles to molecular diffusion in live cells by the spatial pair-correlation function: a connectivity view of the cell.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 166a, 835-Pos.
  22. Torrado B, Malacrida L, Badano JL, Irigoín F, Gratton E.
    Intracellular transport characterization of the transcription factor Gli2 by fluorescence correlation spectroscopy approaches.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 630a, 3123-Pos.
  23. Ranjit S, Dvornikov A, Levi M, Gratton E.
    Multicomponent analysis of phasor plot to decipher changes in metabolic trajectory of biological systems.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 167a, 843-Pos.
  24. Digman MA, Palomba F, Kong X, Yokomori K, Gratton E.
    Pair correlation analysis of Ku dynamics upon DNA damage.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 351a, 1740-Pos.
  25. Hedde PN, Malacrida L, Ahrar S, Siryaporn A, Gratton E.
    SideSPIM - a flexible multipurpose platform for light sheet microscopy.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 187a, 945-Plat.
  26. Cinco R, Hedde PN, Digman MA, Gratton E.
    Spatial characterization of NADH concentration and diffusion in cells and tissue.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 335a, 1662-Pos.
  27. Gratton E, Dvornikov A.
    Spectral resolution in fluorescence microscopy in strongly scattering media.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 166a, 838-Pos.
  28. Murata MM, Kong X, Yokomori K, Digman MA.
    Fluorescence lifetime of NADH reveals PARP-dependent increase of oxidative phosphorylation critical for cell survival.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 83a, 425-Pos.
  29. Mah EJ, Yee AF, Digman MA.
    Metabolism modulation of cancer cells on varying substrate stiffnesses.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 19a, 101-Plat.
  30. Sameni S.
    Laurdan imaging and spectral phasor analysis reveals increased membrane fluidity in Huntington disease.
    62nd Annual Meeting of the Biophysical Society. San Francisco, California. February 17–21, 2018.
    Biophys J. 2018; 114(3, Suppl 1): 177a, 891-Pos.
  31. Kong L, Murata MM, Digman MA.
    Absence of REV3L promotes p53-regulated cancer cell metabolism in cisplatin-treated lung carcinoma cells.
    Biochem Biophys Res Commun. 2018; 496(1): 199-204.
  32. Cutrale F, Gratton E.
    Apparatus and method for an inclined single plane imaging microscope box (iSPIM box).
    Patent US9874736B2, 23 Jan 2018.