Laboratory for Fluorescence Dynamics

A NIH research center for biomedical fluorescence spectroscopy at the University of California, Irvine

Publications Citing Globals Software

Articles, abstracts, and book chapters citing Globals Software (Globals Unlimited, Globals for Spectroscopy, and Globals for Images aka SimFCS) by authors not affiliated with the Laboratory for Fluorescence Dynamics (LFD).

2020

  1. de Luca G, Galparsoroa DF, Sancataldo G, Leone M, Foderà V, Vetri V.
    Probing ensemble polymorphism and single aggregate structural heterogeneity in insulin amyloid self-assembly.
    J Colloid Interface Sci. 2020; 574: 229-240.
  2. Mieskes F, Wehnekamp F, Plucińska G, Thong R, Misgeld T, Lamb DC.
    Trajectory data of antero- and retrograde movement of mitochondria in living Zebrafish larvae.
    Data Brief. 2020; 29, 105280. PMCID: PMC7068625
  3. Ward KE, Sengupta R, Ropa JP, Amiar S, Stahelin RV.
    The cytosolic Phospholipase A2α N-terminal C2 domain binds and oligomerizes on membranes with positive curvature.
    Biomolecules. 2020; 10(4), 647. PMCID: PMC7226022
  4. Wang X, Wang Y, Zhang Z, Huang M, Fei Y, Ma J, Mi L.
    Discriminating different grades of cervical intraepithelial neoplasia based on label-free phasor fluorescence lifetime imaging microscopy.
    Biomed Opt Express. 2020; 11(4): 1977-1990. PMCID: PMC7173885
  5. Huang M, Liang X, Zhang Z, Wang J, Fei Y, Ma J, Qu S, Mi L.
    Carbon dots for intracellular pH sensing with fluorescence lifetime imaging microscopy.
    Nanomaterials (Basel). 2020; 10(4), 604. PMCID: PMC7221822
  6. Verneri P, Echegaray CV, Oses C, Stortz M, Guberman A, Levi V.
    Dynamical reorganization of the pluripotency transcription factors Oct4 and Sox2 during early differentiation of embryonic stem cells.
    Sci Rep. 2020; 10(1), 5195. PMCID: PMC7089971
  7. Shi W, Koo DES, Kitano M, Chiang HJ, Trinh LA, Turcatel G, Steventon B, Arnesano C, Warburton D, Fraser SE, Cutrale F.
    Pre-processing visualization of hyperspectral fluorescent data with spectrally encoded enhanced representations.
    Nat Commun. 2020; 11(1), 726. PMCID: PMC7002680
  8. Suárez H, López-Martín S, Toribio V, Zamai M, Hernández-Riquer MV, Genís L, Arroyo AG, Yáñez-Mó M.
    Regulation of MT1-MMP activity through its association with ERMs.
    Cells. 2020; 9(2), 348. PMCID: PMC7072721
  9. Zhang S, Hinde E, Schneider MP, Jans DA, Bogoyevitch MA.
    Nuclear bodies formed by polyQ-ataxin-1 protein are liquid RNA/protein droplets with tunable dynamics.
    Sci Rep. 2020; 10(1), 1557. PMCID: PMC6994494
  10. Pooley JR, Rivers CA, Kilcooley MT, Paul SN, Cavga AD, Kershaw YM, Muratcioglu S, Gursoy A, Keskin O, Lightman SL.
    Beyond the heterodimer model for mineralocorticoid and glucocorticoid receptor interactions in nuclei and at DNA.
    PLoS One. 2020; 15(1), e0227520. PMCID: PMC6953809

2019

  1. Brown JWP, Bauer A, Polinkovsky ME, Bhumkar A, Hunter DJB, Gaus K, Sierecki E, Gambin Y.
    Single-molecule detection on a portable 3D-printed microscope.
    Nat Commun. 2019; 10(1), 5662. PMCID: PMC6906517
  2. Clark NM, Buckner E, Fisher AP, Nelson EC, Nguyen TT, Simmons AR, de Balaguer MAL, Butler-Smith T, Sheldon PJ, Bergmann DC, Williams CM, Sozzani R.
    Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks.
    Nat Commun. 2019; 10(1), 5574. PMCID: PMC6897965
  3. Martin EW, Chakraborty S, Presman DM, Ardori FT, Oh KS, Kaileh M, Tessarollo L, Sung MH.
    Assaying homodimers of NF-κB in live single cells.
    Front Immunol. 2019; 10, 2609. PMCID: PMC6853996
  4. Rajah A, Boudreau CG, Ilie A, Wee TL, Tang K, Borisov AZ, Orlowski J, Brown CM.
    Paxillin S273 phosphorylation regulates adhesion dynamics and cell migration through a common protein complex with PAK1 and βPIX.
    Sci Rep. 2019; 9(1), 11430. PMCID: PMC6686007
  5. Ghosh RP, Shi Q, Yang L, Reddick MP, Nikitina T, Zhurkin VB, Fordyce P, Stasevich TJ, Chang HY, Greenleaf WJ, Liphardt JT.
    Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions.
    Nat Commun. 2019; 10(1), 3221. PMCID: PMC6642133
  6. Dobrinskikh E, Al-Juboori SI, Shabeka U, Reisz JA, Zheng C, Marwan AI.
    Heterogeneous pulmonary response after tracheal occlusion: clues to fetal lung growth.
    J Surg Res. 2019; 239: 242-252.
  7. Iachina I, Antonescu IE, Dreier J, Sørensen JA, Brewer JR.
    The nanoscopic molecular pathway through human skin.
    Biochim Biophys Acta Gen Subj. 2019; 1863(7): 1226-1233.
  8. Whiteside MD, Werner GDA, Caldas VEA, Padje Av, Dupin SE, Elbers B, Bakker M, Wyatt GAK, Klein M, Hink MA, Postma M, Vaitla B, Noë R, Shimizu TS, West SA, Kiers T.
    Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks.
    Curr Biol. 2019; 29(12), 2043–2050.e8. PMCID: PMC6584331
  9. Nguyen H, Ward WS, James NG.
    Spatial and temporal resolution of mORC4 fluorescent variants reveals structural requirements for achieving higher order self-association and pronuclei entry.
    Methods Appl Fluoresc. 2019; 7(3), 035002. PMCID: PMC6636821
  10. Rao E, Foderà V, Leone M, Vetria V.
    Direct observation of alpha-lactalbumin, adsorption and incorporation into lipid membrane and formation of lipid/protein hybrid structures.
    Biochim Biophys Acta Gen Subj. 2019; 1863(5): 784-794.
  11. Chen WQ, Drapek C, Li DX, Xu ZH, Benfey PN, Baia SN.
    Histone deacetylase HDA19 affects root cortical cell fate by interacting with SCARECROW.
    Plant Physiol. 2019; 180: 276-288. PMCID: PMC6501111
  12. Montford JR, Bauer C, Dobrinskikh E, Hopp K, Levi M, Weiser-Evans M, Nemenoff R, Furgeson SB.
    Inhibition of 5-lipoxygenase decreases renal fibrosis and progression of chronic kidney disease.
    Am J Physiol Renal Physiol. 2019; 316(4): F732–F742. PMCID: PMC6483031
  13. Pazin WM, Vilanova N, Voets IK, Soares AEE, Ito AS.
    Effects of artepillin C on model membranes displaying liquid immiscibility.
    Braz J Med Biol Res. 2019; 52(3), e8281. PMCID: PMC6437936
  14. di Bona M, Mancini MA, Mazza D, Vicidomini G, Diaspro A, Lanzanò L.
    Measuring mobility in chromatin by intensity-sorted FCS.
    Biophys J. 2019; 116(6): 987-999. PMCID: PMC6428914
  15. Guimarães AJ, de Cerqueira MD, Zamith-Miranda D, Lopez PH, Rodrigues ML, Pontes B, Viana NB, DeLeon-Rodriguez CM, Rossi DCP, Casadevall A, Gomes AMO, Martinez LR, Schnaar RL, Nosanchuk JD, Nimrichter L.
    Host membrane glycosphingolipids and lipid microdomains facilitate Histoplasma capsulatum internalization by macrophages.
    Cell Microbiol. 2019; 21(3), e12976. PMCID: PMC6805151
  16. Marwan AI, Shabeka U, Reisz JA, Zheng C, Serkova NJ, Dobrinskikh E.
    Unique heterogeneous topological pattern of the metabolic landscape in rabbit fetal lungs following tracheal occlusion.
    Fetal Diagn Ther. 2019; 45(3): 145-154. PMCID: NIHMS995357
  17. Akhunzada MJ, D’Autilia F, Chandramouli B, Bhattacharjee N, Catte A, di Rienzo R, Cardarelli F, Brancato G.
    Interplay between lipid lateral diffusion, dye concentration and membrane permeability unveiled by a combined spectroscopic and computational study of a model lipid bilayer.
    Sci Rep. 2019; 9(1), 1508. PMCID: PMC6365552
  18. Chacko JV, Eliceiri KW.
    Autofluorescence lifetime imaging of cellular metabolism: Sensitivity towards cell density, pH, intracellular and intercellular heterogeneity.
    Cytometry A. 2019; 95(1): 56-69. PMCID: PMC6329636

2018

  1. Tan FH, Putoczki TL, Lou J, Hinde E, Hollande F, Giraud J, Stylli SS, Paradiso L, Zhu HJ, Sieber OM, Luwor RB.
    Ponatinib inhibits multiple signaling pathways involved in STAT3 signaling and attenuates colorectal tumor growth.
    Cancers (Basel). 2018; 10(12), 526. PMCID: PMC6316865
  2. Almendro-Vedia VG, García C, Ahijado-Guzmán R, Fuente-Herreruela Dl, Muñoz-Úbeda M, Natale P, Viñas MH, Albuquerque RQ, Guerrero-Martínez A, Monroy F, Lillo MP, López-Montero I.
    Supramolecular zippers elicit interbilayer adhesion of membranes producing cell death.
    Biochim Biophys Acta Gen Subj. 2018; 1862(12): 2824-2834. PMCID: PMC6202437
  3. Rubio SG, Pastor NM, García C, Almendro-Vedia VG, Ferrer I, Natale P, Paz-Ares L, Lillo MP, López-Montero I.
    Enhanced cytotoxic activity of mitochondrial mechanical effectors in human lung carcinoma H520 cells: pharmaceutical implications for cancer therapy.
    Front Oncol. 2018; 8, 514. PMCID: PMC6242888
  4. Li Y, Junge JA, Arnesano C, Gross GG, Miner JH, Moats R, Roberts RW, Arnold DB, Fraser SE.
    Discs large 1 controls daughter-cell polarity after cytokinesis in vertebrate morphogenesis.
    Proc Natl Acad Sci U S A. 2018; 115(46): E10859-E10868. PMCID: PMC6243286
  5. Sediqi H, Wray A, Jones C, Jones M.
    Application of Spectral Phasor analysis to sodium microenvironments in myoblast progenitor cells.
    PLoS One. 2018; 13(10), e0204611. PMCID: PMC6209149
  6. Goo BMSS, Sanstrum BJ, Holden DZY, Yu Y, James NG.
    Arc/Arg3.1 has an activity-regulated interaction with PICK1 that results in altered spatial dynamics.
    Sci Rep. 2018; 8(1), 14675. PMCID: PMC6168463
  7. Ferri G, Bugliani M, Marchetti P, Cardarelli F.
    Probing the light scattering properties of insulin secretory granules in single live cells.
    Biochem Biophys Res Commun. 2018; 503(4): 2710-2714.
  8. Ferri G, Digiacomo L, D’Autilia F, Durso W, Caracciolo G, Cardarellia F.
    Time-lapse confocal imaging datasets to assess structural and dynamic properties of subcellular nanostructures.
    Sci Data. 2018; 5, 180191. PMCID: PMC6142892
  9. Pham XQ, Jonusauskaite L, Kumar ADN, Lefevre JP, Perrier A, Ha-Thi MH, Leray I.
    New water-soluble fluorescent sensors based on calix[4]arene biscrown-6 for selective detection of cesium.
    J Photochem Photobiol A. 2018; 364: 355-362.
  10. Drapek C, Sparks EE, Marhavy P, Taylor I, Andersen TG, Hennacy JH, Geldner N, Benfey PN.
    Minimum requirements for changing and maintaining endodermis cell identity in the Arabidopsis root.
    Nat Plants. 2018; 4(8): 586-595. PMCID: PMC6135099
  11. Martin JL, Mendonça LM, Marusinec R, Zuczek J, Angert I, Blower RJ, Mueller JD, Perilla JR, Zhang W, Mansky LM.
    Critical role of the human T-Cell leukemia virus type 1 capsid N-terminal domain for Gag-Gag interactions and virus particle assembly.
    J Virol. 2018; 92(14), e00333-18. PMCID: PMC6026748
  12. O’Lexy R, Kasai K, Clark N, Fujiwara T, Sozzani R, Gallagher KL.
    Exposure to heavy metal stress triggers changes in plasmodesmatal permeability via deposition and breakdown of callose.
    J Exp Bot. 2018; 69(15), 3715–3728. PMCID: PMC6022669
  13. Stortz M, Angiolini J, Mocskos E, Wolosiuk A, Pecci A, Levi V.
    Mapping the dynamical organization of the cell nucleus through fluorescence correlation spectroscopy.
    Methods. 2018; 140-141: 10-22.
  14. Nolan R, Iliopoulou M, Alvarez L, Padilla-Parra S.
    Detecting protein aggregation and interaction in live cells: A guide to number and brightness.
    Methods. 2018; 140-141: 172-177.
  15. Garcia E, de Serna JBl.
    Dissecting single-cell molecular spatiotemporal mobility and clustering at focal adhesions in polarised cells by fluorescence fluctuation spectroscopy methods.
    Methods. 2018; 140–141: 85-96.
  16. Thattikota Y, Tollis S, Palou R, Vinet J, Tyers M, D’Amours D.
    Cdc48/VCP promotes chromosome morphogenesis by releasing condensin from self-entrapment in chromatin.
    Mol Cell. 2018; 69(4): 664-676.e5.
  17. Scipioni L, di Bona M, Vicidomini G, Diaspro A, Lanzanò L.
    Local raster image correlation spectroscopy generates high-resolution intracellular diffusion maps.
    Commun Biol. 2018; 1, 10.
  18. Sant'Anna-Silva ACB, Santos GC, Campos SPC, Gomes AMO, Pérez-Valencia JA, Rumjanek FD.
    Metabolic profile of oral squamous carcinoma cell lines relies on a higher demand of lipid metabolism in metastatic cells.
    Front Oncol. 2018; 8, 13. PMCID: PMC5801303
  19. Descalzo AB, Xu HJ, Shen Z, Rurack K.
    Influence of the meso-substituent on strongly red emitting phenanthrene-fused boron–dipyrromethene (BODIPY) fluorophores with a propeller-like conformation.
    J Photochem Photobiol A. 2018; 352: 98-105.
  20. Friedman JE, Dobrinskikh E, Alfonso-Garcia A, Fast A, Janssen RC, Soderborg TK, Anderson AL, Reisz JA, D'Alessandro A, Frank DN, Robertson CE, de Houssaye BAl, Johnson LK, Orlicky DJ, Wang XX, Levi M, Potma EO, Kasmi KCE, Jonscher KR.
    Pyrroloquinoline quinone prevents developmental programming of microbial dysbiosis and macrophage polarization to attenuate liver fibrosis in offspring of obese mice.
    Hepatol Commun. 2018; 2(3): 313-328. PMCID: PMC5831029
  21. García C, Losada A, Sacristán MA, Martínez-Leal JF, Galmarini CM, Lillo MP.
    Dynamic cellular maps of molecular species: Application to drug-target interactions.
    Sci Rep. 2018; 8(1), 1140. PMCID: PMC5773516

2017

  1. Cielecki PP, Sobolewska EK, Kostiučenko O, Leißner T, Tamulevičius T, Tamulevičius S, Rubahn HG, Adam J, Fiutowski J.
    Plasmon-organic fiber interactions in diamond-like carbon coated nanostructured gold films.
    Opt Commun. 2017; 402: 635-640.
  2. Sena F, Sotelo-Silveira M, Astrada S, ABotella M, Malacrida L, Borsani O.
    Spectral phasor analysis reveals altered membrane order and function of root hair cells in Arabidopsis dry2/sqe1-5 drought hypersensitive mutant.
    Plant Physiol Biochem. 2017; 119: 224-231.
  3. Hsu K, Lee TY, Periasamy A, Kao FJ, Li LT, Lin CY, Lin HJ, Lin M.
    Adaptable interaction between aquaporin-1 and band 3 reveals a potential role of water channel in blood CO2 transport.
    FASEB J. 2017; 31(10): 4256-4264. PMCID: PMC6207180
  4. Sadybekov A, Tian C, Arnesano C, Katritch V, Herring BE.
    An autism spectrum disorder-related de novo mutation hotspot discovered in the GEF1 domain of Trio.
    Nat Commun. 2017; 8(1), 601. PMCID: PMC5605661
  5. Doll F, Hassenrück J, Wittmann V, Zumbusch A.
    Intracellular imaging of protein-specific glycosylation.
    Methods in Enzymology. 2017; 598: 283-319.
  6. Strom AR, Emelyanov AV, Mir M, Fyodorov DV, Darzacq X, Karpen GH.
    Phase separation drives heterochromatin domain formation.
    Nature. 2017; 547(7622): 241-245. PMCID: PMC6022742
  7. Cheniour M, Brewer J, Bagatolli L, Marcillat O, Granjon T.
    Evidence of proteolipid domain formation in an inner mitochondrial membrane mimicking model.
    Biochim Biophys Acta. 2017; 1861(5): 969-976.
  8. Eriksen AZ, Brewer J, Andresen TL, Urquhart AJ.
    The diffusion dynamics of PEGylated liposomes in the intact vitreous of the ex vivo porcine eye: A fluorescence correlation spectroscopy and biodistribution study.
    Int J Pharm. 2017; 522(1-2): 90-97.
  9. Pelras T, Duong HTT, Kim BJ, Hawkett BS, Müllner M.
    A 'grafting from' approach to polymer nanorods for pH-triggered intracellular drug delivery.
    Polymer. 2017; 112: 244-251.
  10. Modzel M, Lund FW, Wüstner D.
    Synthesis and live-cell imaging of fluorescent sterols for analysis of intracellular cholesterol transport.
    Cholesterol Homeostasis (Methods in Molecular Biology, Vol. 1583). By I Gelissen and A Brown (Editors). pp. 111-140, 2017.
  11. Jones DM, Alvarez LA, Nolan R, Ferriz M, Urruela RS, Massana-Muñoz X, Novak-Kotzer H, Dustin ML, Padilla-Parra S.
    Dynamin-2 stabilizes the HIV-1 fusion pore with a low oligomeric state.
    Cell Rep. 2017; 18(2): 443-453. PMCID: PMC5263234

2016

  1. Palominos MA, Vilches D, Bossel E, Soto-Arriazza MA.
    Interaction between amphipathic triblock copolymers and L-α-dipalmitoyl phosphatidylcholine large unilamellar vesicles.
    Colloids Surf B Biointerfaces. 2016; 148: 30-40.
  2. Wrona-Piotrowicz A, Ciechańska M, Zakrzewski J, Makal A.
    Pyrene fluorophores bearing two carbonyl groups in 1,2- positions: Synthesis and photophysical properties of pyrene-1,2-dicarboximides and a pyrene-1,2-dicarboxamide.
    J Photochem Photobiol A. 2016; 330: 15-21.
  3. Blackwell DJ, Zak TJ, Robia SL.
    Cardiac Calcium ATPase dimerization measured by cross-linking and fluorescence energy transfer.
    Biophys J. 2016; 111(6): 1192-1202. PMCID: PMC5034344
  4. Hirata E, Kiyokawa E.
    Future perspective of single-molecule FRET biosensors and intravital FRET microscopy.
    Biophys J. 2016; 111(6): 1103-1111. PMCID: PMC5034264
  5. Kim YE, Hosp F, Frottin F, Ge H, Mann M, Hayer-Hartl M, Hartl FU.
    Soluble oligomers of PolyQ-expanded Huntingtin target a multiplicity of key cellular factors.
    Mol Cell. 2016; 63(6): 951-964.
  6. Celli A, Crumrine D, Meyer JM, Mauro TM.
    Endoplasmic reticulum Calcium regulates epidermal barrier response and desmosomal structure.
    J Invest Dermatol. 2016; 136(9): 1840-1847. PMCID: PMC5070468
  7. Volz P, Krause N, Balke J, Schneider C, Walter M, Schneider F, Schlesinger R, Alexiev U.
    Light and pH-induced Changes in Structure and Accessibility of Transmembrane Helix B and Its Immediate Environment in Channelrhodopsin-2.
    J Biol Chem. 2016; 291: 17382-17393. PMCID: PMC5016135
  8. Chiu CL, Patsch K, Cutrale F, Soundararajan A, Agus DB, Fraser SE, Ruderman D.
    Intracellular kinetics of the androgen receptor shown by multimodal Image Correlation Spectroscopy (mICS).
    Sci Rep. 2016; 6: 22435. PMCID: PMC4776155
  9. Wrona-Piotrowicz A, Ciechańska M, Zakrzewski J, Métivier R, Brosseau A, Makal A.
    Directed lithiation of a pyrene-1-carboxamide as a route to new pyrenyl fluorophores.
    Dyes and Pigments. 2016; 125: 331-338.
  10. Constantine M, Liew CK, Lo V, Macmillan A, Cranfield CG, Sunde M, Whan R, Graham RM, Martinac B.
    Heterologously-expressed and Liposome-reconstituted Human Transient Receptor Potential Melastatin 4 Channel (TRPM4) is a Functional Tetramer.
    Sci Rep. 2016; 6: 19352. PMCID: PMC4726259
  11. Dreier J, Sørensen JA, Brewer JR.
    Superresolution and fluorescence dynamics evidence reveal that intact liposomes do not cross the human skin barrier.
    PLoS One. 2016; 11(1): e0146514. PMCID: PMC4709185
  12. Johnson KA, Taghon GJF, Scott JL, Stahelin RV.
    The Ebola Virus matrix protein, VP40, requires phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2) for extensive oligomerization at the plasma membrane and viral egress.
    Sci Rep. 2016; 6: 19125. PMCID: PMC4709572
  13. Ferri G, Nucara L, Biver T, Battisti A, Signore G, Bizzarri R.
    Organization of inner cellular components as reported by a viscosity-sensitive fluorescent Bodipy probe suitable for phasor approach to FLIM.
    Biophys Chem. 2016; 208: 17-25.

2015

  1. Macchi S, Signore G, Boccardi C, di Rienzo C, Beltram F, Cardarelli F.
    Spontaneous membrane-translocating peptides: influence of peptide self-aggregation and cargo polarity.
    Sci Rep. 2015; 16(5): 16914. PMCID: PMC4645181
  2. Kurniawansyah F, Duonga HTT, Luu TD, Mammucari R, Vittorio O, Boyer C, Foster N.
    Inhalable curcumin formulations: Micronization and bioassay.
    Chem Eng J. 2015; 279: 799–808.
  3. Golebiewska U, Scarlata S.
    High pressure promotes alpha-synuclein aggregation in cultured neuronal cells.
    FEBS Letters. 2015; 589(21): 3309-3312. PMCID: PMC4661088
  4. Molina-Guijarro JM, García C, Macías A, García-Fernández LF, Moreno C, Reyes F, Martínez-Leal JF, Fernández R, Martínez V, Valenzuela C, Lillo MP, Galmarini CM.
    Elisidepsin interacts directly with Glycosylceramides in the plasma membrane of tumor cells to induce necrotic cell death.
    PLoS One. 2015; 10(10): e0140782. PMCID: PMC4608773
  5. Kluba M, Engelborghs Y, Hofkens J, Mizuno H.
    Inhibition of receptor dimerization as a novel negative feedback mechanism of EGFR signaling.
    PLoS One. 2015; 10(10): e0139971. PMCID: PMC4605717
  6. Wrona-Piotrowicz A, Plażuk D, Zakrzewski J, Métivier R, Nakatani K, Makal A.
    Solution-and solid-state emitters with large Stokes shifts combining pyrene and 4-hydroxythiazole fluorophores.
    Dyes and Pigments. 2015; 121: 290-298.
  7. van Maarschalkerweerd A, Vetri V, Vestergaard B.
    Cholesterol facilitates interactions between α-synuclein oligomers and charge-neutral membranes.
    Febs Lett. 2015; 589(19): 2661-2667.
  8. Biswas KH, Hartman KL, Yu Ch, Harrison OJ, Song H, Smith AW, Huang WYC, Lin WC, Guo Z, Padmanabhan A, Troyanovsky SM, Dustin ML, Shapiro L, Honig B, Zaidel-Bar R, Groves JT.
    E-cadherin junction formation involves an active kinetic nucleation process.
    Proc Natl Acad Sci USA. 2015; 112(35): 10932-10937. PMCID: PMC4568248
  9. Nieves DJ, Li Y, Fernig DG, Lévy R.
    Photothermal raster image correlation spectroscopy of gold nanoparticles in solution and on live cells.
    R Soc Open Sci. 2015; 2(6): 140454. PMCID: PMC4632534
  10. Angiolini J, Plachta N, Mocskos E, Levi V.
    Exploring the dynamics of cell processes through simulations of fluorescence microscopy experiments.
    Biophys J. 2015; 108(11): 2613–2618. PMCID: PMC4457496
  11. Byers CE, Barylko B, Ross JA, Southworth DR, James NG, IV CAT, Wang L, Collins KA, Estrada A, Waung M, Tassin TC, Huber KM, Jameson DM, Albanesi JP.
    Enhancement of dynamin polymerization and GTPase activity by Arc/Arg3.1.
    Biochim Biophys Acta. 2015; 1850(6): 1310-1318. PMCID: PMC4398645
  12. Anton H, Taha N, Boutant E, Richert L, Khatter H, Klaholz B, Rondé P, Réal E, de Rocquigny H, Mély Y.
    Investigating the cellular distribution and interactions of HIV-1 nucleocapsid protein by quantitative fluorescence microscopy.
    PLoS One. 2015; 10(2): e0116921. PMCID: PMC4344342
  13. Sun R, Celli A, Crumrine D, Hupe M, Adame LC, Pennypacker SD, Park K, Uchida Y, Feingold KR, Elias PM, Ilic D, Mauro TM.
    Lowered humidity produces human epidermal equivalents with enhanced barrier properties.
    Tissue Eng Part C Methods. 2015; 21(1): 15-22. PMCID: PMC4291214

2014

  1. Youker RT, Teng H.
    Measuring protein dynamics in live cells: protocols and practical considerations for fluorescence fluctuation microscopy.
    J Biomed Opt. 2014; 19(9): 090801. PMCID: PMC4183152
  2. Thiery S, Declairieux C, Tondelier D, Seo G, Geffroy B, Jeannin O, Métivier R, Rault-Berthelot J, Poriel C.
    2-Substituted vs 4-substituted-9,9'-spirobifluorene host materials for green and blue phosphorescent OLEDs: a structure–property relationship study.
    Tetrahedron. 2014; 70(36): 6337-6351.
  3. Maksimov EG, Schmitt FJ, Shirshin EA, Svirin MD, Elanskaya IV, Friedrich T, Fadeev VV, Paschenko VZ, Rubin AB.
    The time course of non-photochemical quenching in phycobilisomes of Synechocystis sp. PCC6803 as revealed by picosecond time-resolved fluorimetry.
    Biochim Biophys Acta. 2014; 1837(9): 1540-1547.
  4. Montecinos-Franjola F, James NG, Concha-Marambio L, Brunet JE, Lagos R, Monasterio O, Jameson DM.
    Single tryptophan mutants of FtsZ: nucleotide binding/exchange and conformational transitions.
    Biochim Biophys Acta. 2014; 1844(7): 1193-1200.
  5. Bianchini P, Cardarelli F, di Luca M, Diaspro A, Bizzarri R.
    Nanoscale protein diffusion by STED-based pair correlation analysis.
    PLoS One. 2014; 9(6): e99619. PMCID: PMC4072630
  6. Mercado J, Baylie R, Navedo MF, Yuan C, Scott JD, Nelson MT, Brayden JE, Santana LF.
    Local control of TRPV4 channels by AKAP150-targeted PKC in arterial smooth muscle.
    J Gen Physiol. 2014; 143(5): 559-575. PMCID: PMC4003184
  7. Jameson DM, Vetromile CM, James NG.
    Investigations of protein–protein interactions using time-resolved fluorescence and phasors.
    Methods. 2014; 59(3): 278-286.
  8. Labilloy A, Youkera RT, Bruns JR, Kukicd I, Kiselyov K, Halftere W, Finegold D, Monte SJHd, Weisz OA.
    Altered dynamics of a lipid raft associated protein in a kidney model of Fabry disease.
    Mol Genet Metab. 2014; 111(2): 184-92. PMCID: PMC3946758
  9. Salvemini IL, Gau DM, Reid J, Bagatolli LA, Macmillan A, Moens PDJ.
    Low PIP(2) molar fractions induce nanometer size clustering in giant unilamellar vesicles.
    Chem Phys Lipids. 2014; 177: 51-63.
  10. Abdisalaam S, Davis AJ, Chen DJ, Alexandrakis G.
    Scanning fluorescence correlation spectroscopy techniques to quantify the kinetics of DNA double strand break repair proteins after γ-irradiation and bleomycin treatment.
    Nucleic Acids Res. 2014; 42(1): e5. PMCID: PMC3874206

2013

  1. Stahelin RV.
    Monitoring peripheral protein oligomerization on biological membranes.
    In Receptor-Receptor Interactions (Methods in Cell Biology, Vol. 117). By PM Conn (Editors). Academic Press, pp. 359-371, 2013. ISBN: 9780124081437
  2. Soto-Arriaza MA, Olivares-Ortega C, Quina FH, Aguilar LF, Sotomayor CP.
    Effect of cholesterol content on the structural and dynamic membrane properties of DMPC/DSPC large unilamellar bilayers.
    Biochim Biophys Acta. 2013; 1828(11): 2763-2769.
  3. Rocha-Perugini V, Zamai M, González-Granado JM, Barreiro O, Tejera E, Yañez-Mó M, Caiolfa VR, Sanchez-Madrid F.
    CD81 controls sustained T cell activation signaling and defines the maturation stages of cognate immunological synapses.
    Mol Cell Biol. 2013; 33(18): 3644-3658. PMCID: PMC3753866
  4. Butler CE, de Carvalho TMU, Grisard EC, Field RA, Tyler KM.
    Trans-sialidase stimulates eat me response from epithelial cells.
    Traffic. 2013; 14(7): 853-869. PMCID: PMC3770925
  5. Youker RT, Bruns JR, Costa SA, Rbaibi Y, Lanni F, Kashlan OB, Teng H, Weisz OA.
    Multiple motifs regulate apical sorting of p75 via a mechanism that involves dimerization and higher-order oligomerization.
    Mol Biol Cell. 2013; 24(12): 1996-2007. PMCID: PMC3681702
  6. Fiche JB, Cattoni DI, Diekmann N, Langerak JM, Clerte C, Royer CA, Margeat E, Doan T, Nöllmann M.
    Recruitment, assembly, and molecular architecture of the SpoIIIE DNA pump revealed by superresolution microscopy.
    PLoS Biol. 2013; 11(5): e1001557. PMCID: PMC3646729
  7. Cabello G, Lillo L, Caro C, Soto-Arriaza MA, Chornik B, Buono-Core GE.
    Evaluation on the optical properties of Ga2O3−x thin films co-doped with Tb3+ and transition metals (Mn2+, Cr3+) prepared by a photochemical route.
    Ceramics International. 2013; 39(3): 2443-2450.
  8. Bachir AI, Kubow KE, Horwitz AR.
    Fluorescence fluctuation approaches to the study of adhesion and signaling.
    Fluorescence Fluctuation Spectroscopy (FFS), Part B (Methods in Enzymology, Vol. 519). By SY Tetin (Editors). Academic Press, pp. 167-201, 2013. ISBN: 9780124055391
  9. di Rienzo C, Jacchetti E, Cardarelli F, Bizzarri R, Beltram F, Cecchini M.
    Unveiling LOX-1 receptor interplay with nanotopography: mechanotransduction and atherosclerosis onset.
    Sci Rep. 2013; 3: 1141. PMCID: PMC3555090

2012

  1. Lund FW, Lomholt MA, Solanko LM, Bittman R, Wüstner D.
    Two-photon time-lapse microscopy of BODIPY-cholesterol reveals anomalous sterol diffusion in chinese hamster ovary cells.
    BMC Biophys. 2012; 5(20). PMCID: PMC3532368
  2. Yoon Y, Zhang X, Cho W.
    Phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) specifically induces membrane penetration and deformation by Bin/amphiphysin/Rvs (BAR) domains.
    J Biol Chem. 2012; 287(41): 34078-34090. PMCID: PMC3464517
  3. Bloksgaard M, Bek S, Marcher AB, Neess D, Brewer J, Hannibal-Bach HK, Helledie T, Fenger C, Due M, Berzina Z, Neubert R, Chemnitz J, Finsen B, Clemmensen A, Wilbertz J, Saxtorph H, Knudsen J, Bagatolli L, Mandrup S.
    The acyl-CoA binding protein is required for normal epidermal barrier function in mice.
    J Lipid Res. 2012; 53(10): 2162-2174. PMCID: PMC3435549
  4. Aguilar LF, Pino JA, Soto-Arriaza MA, Cuevas FJ, Sánchez SA, Sotomayor CP.
    Differential dynamic and structural behavior of lipid-cholesterol domains in model membranes.
    PLoS One. 2012; 7(6): e40254. PMCID: PMC3386959
  5. Bok S, Korampally V, Polo-Parada L, Mamidi V, Baker GA, Gangopadhyay K, Folk WR, Dasgupta PK, Gangopadhyay S.
    Confeito-like assembly of organosilicate-caged fluorophores: ultrabright suprananoparticles for fluorescence imaging.
    Nanotechnology. 2012; 23(17): 175601. PMCID: PMC3360483
  6. Jourdan N, Jobart-Malfait A, Reis GD, Quignon F, Piolot T, Klein C, Tramier M, Coppey-Moisan M, Marechal V.
    J Virol. 2012; 86(9): 5314-5329. PMCID: PMC3347338
  7. Gustavsson T, Improta R, Banyasz A, Vaya I, Markovitsi D.
    The effect of methylation on the excited state dynamics of aminouracils.
    J Photochem Photobiol A Chem. 2012; 234: 37-43.
  8. Golebiewska U, Johnston JM, Devi L, Filizola M, Scarlata S.
    Differential Response to Morphine of the Oligomeric State of μ-Opioid in the Presence of δ-Opioid Receptors.
    Biochemistry. 2012; 50(14): 2829-2837. PMCID: PMC3071705
  9. Storti B, Bizzarri R, Cardarelli F, Beltram F.
    Intact microtubules preserve transient receptor potential vanilloid 1 (TRPV1) functionality through receptor binding.
    J Biol Chem. 2012; 287(10): 7803-7811. PMCID: PMC3293569
  10. Cebecauer M, Humpolíčková J, Rossy J.
    Advanced imaging of cellular signaling events.
    Imaging and Spectroscopic Analysis of Living Cells - Live Cell Imaging of Cellular Elements and Functions (Methods in Enzymology, Vol. 505). By PM Conn (Editors). Academic Press, pp. 273-289, 2012. ISBN: 9780123884480
  11. Corti V, Ossato G, Cavallaro U, Francavilla C, Caiolfa VR, Zamai M.
    TIRFM-N&B analysis of FGFR1 clustering in response to NCAM and FGF2.
    56th Annual Meeting of the Biophysical Society. San Diego, California. February 25-29, 2012.
    Biophys J. 2012; 102(3, Suppl 1): 192a.
  12. McCary CA, Yoon Y, Panagabko C, Cho W, Atkinson J, Cook-Mills JM.
    Vitamin E isoforms directly bind PKCα and differentially regulate activation of PKCα.
    Biochem J. 2012; 44(1): 189-198. PMCID: PMC3271793
  13. Stock RP, Brewer J, Wagner K, Ramos-Cerrillo B, Duelund L, Jernshøj KD, Olsen LF, Bagatolli LA.
    Sphingomyelinase D activity in model membranes: structural effects of in situ generation of ceramide-1-phosphate.
    PLoS One. 2012; 7(4): e36003. PMCID: PMC3338491

2011

  1. Lucas N, Cho W.
    Phosphatidylserine Binding Is Essential for Plasma Membrane Recruitment and Signaling Function of 3-Phosphoinositide-dependent Kinase-1.
    J Biol Chem. 2011; 286(48): 41265-41272. PMCID: PMC3308839
  2. Salinas S, Soto-Arriaza MA, Loeb B.
    New iridium cyclometallated complexes with potential application in OLED.
    Polyhedron. 2011; 30(17): 2863-2869.
  3. Cerreto M, Cavaliere P, Carluccio C, Amato F, Zagari A, Daniele A, Salvatore F.
    Natural phenylalanine hydroxylase variants that confer a mild phenotype affect the enzyme's conformational stability and oligomerization equilibrium.
    Biochim Biophys Acta. 2011; 1812(11): 1435-1445.
  4. Lacoste J, Vining C, Zuo D, Spurmanis A, Brown CM.
    Optimal conditions for live cell microscopy and raster image correlation spectroscopy.
    Reviews in Fluorescence (Vol. 110). By CD Geddes (Editors). Springer New York, pp. 269-309, 2011. ISBN: 9781441998279
  5. Ruan YB, Maisonneuve S, Xie J.
    Highly selective fluorescent and colorimetric sensor for Hg2+ based on triazole-linked NBD.
    Dyes and Pigments. 2011; 90(3): 239-244.
  6. Ross JA, Gilmore MA, Williams D, Aoki KR, Steward LE, Jameson DM.
    Characterization of Förster resonance energy transfer in a botulinum neurotoxin protease assay.
    Anal Biochem. 2011; 413(1): 43-49.
  7. Mahen R, Jeyasekharan AD, Barry NP, Venkitaraman AR.
    Continuous polo-like kinase 1 activity regulates diffusion to maintain centrosome self-organization during mitosis.
    Proc Natl Acad Sci USA. 2011; 108(22): 9310-9315. PMCID: PMC3107272
  8. Schmitt FJ, Maksimov EG, Suedmeyer H, Jeyasangar V, Theiss C, Paschenko VZ, Eichler HJ, Renger G.
    Time resolved temperature switchable excitation energy transfer processes between CdSe/ZnS nanocrystals and phycobiliprotein antenna from Acaryochloris marina.
    Phot Nano Fund Appl. 2011; 9(2): 190-195.
  9. Štefl M, James NG, Ross JA, Jameson DM.
    Applications of phasors to in vitro time-resolved fluorescence measurements.
    Anal Biochem. 2011; 410(1): 62-69. PMCID: PMC3065364
  10. Wheeler G, Tyler KM.
    Widefield microscopy for live imaging of lipid domains and membrane dynamics.
    Biochim Biophys Acta. 2011; 1808(3): 634-641. PMCID: PMC3048960
  11. Kubiak J, Brewer J, Hansen S, Bagatolli LA.
    Lipid lateral organization on giant unilamellar vesicles containing lipopolysaccharides.
    Biophys J. 2011; 100(4): 978-986. PMCID: PMC3037713
  12. Ross JA, Chen Y, Müller J, Barylko B, Wang L, Banks HB, Albanesi JP, Jameson DM.
    Dimeric endophilin A2 stimulates assembly and GTPase activity of dynamin 2.
    Biophys J. 2011; 100(3): 729-737. PMCID: PMC3030234

2010

  1. Malval JP, Leray I.
    Photophysical properties of poly(triptycene vinylene) derivatives and effect of nitrotoluene exposure.
    Chem Phys Lett. 2010; 501(1-3): 54-58.
  2. Flach H, Rosenbaum M, Duchniewicz M, Kim S, Zhang SL, Cahalan MD, Mittler G, Grosschedl R.
    Mzb1 protein regulates calcium homeostasis, antibody secretion, and integrin activation in innate-like B cells.
    Immunity. 2010; 33(5): 723-735. PMCID: PMC3125521
  3. Hornillos V, Tormo L, Amat-Guerri F, Acuña AU.
    Synthesis and spectral properties of fluorescent linear alkylphosphocholines labeled with all-(E)-1,6-diphenyl-1,3,5-hexatriene.
    J Photochem Photobiol A. 2010; 216(1): 79-84.
  4. Risso VA, Primo ME, Brunet JE, Sotomayor CP, Ermácora MR.
    Optical studies of single-tryptophan B. licheniformis β-lactamase variants.
    Biophys Chem. 2010; 151(3): 111-118.
  5. Weinreis SA, Ellis JP, Cavagnero S.
    Dynamic fluorescence depolarization: a powerful tool to explore protein folding on the ribosome.
    Methods. 2010; 52(1): 57-73. PMCID: PMC2934862
  6. Brewer J, de Serna JBl, Wagner K, Bagatolli LA.
    Multiphoton excitation fluorescence microscopy in planar membrane systems.
    Biochim Biophys Acta. 2010; 1798(7): 1301-1308.
  7. Sanabria H, Waxham MN.
    Transient anomalous subdiffusion: Effects of specific and non-specific probe binding with Actin gels.
    J Phys Chem B. 2010; 114(2): 959-972. PMCID: PMC2810870
  8. vandeVen M.
    Using phasors in interpreting one- and two-photon fluorescence lifetime images of fruit and polymer interfaces.
    54th Annual Meeting of the Biophysical Society. February 20-24, 2010. San Francisco, California.
    Biophys J. 2010; 98(3, Suppl 1): 397a.

2009

  1. Alia B, Jabara S, Saliha W, Tamimia RKA, Attarb HA, Monkman AP.
    Synthesis and spectroscopic characterization studies of low molecular weight light emitting PPV segmented copolymers.
    Opt Mater. 2009; 32(2): 350-357.
  2. Abu-Arish A, Kalab P, Ng-Kamstra J, Weis K, Fradin C.
    Spatial distribution and mobility of the Ran GTPase in live interphase cells.
    Biophys J. 2009; 97(8): 2164-2178. PMCID: PMC2764085
  3. Padilla-Parra S, Audugé N, Lalucque H, Mevel JC, Coppey-Moisan M, Tramier M.
    Quantitative comparison of different fluorescent protein couples for fast FRET-FLIM acquisition.
    Biophys J. 2009; 97(8): 2368-2376. PMCID: PMC2764072
  4. Brunstein M, Bruno L, Desposito M, Levi V.
    Anomalous dynamics of melanosomes driven by myosin-V in Xenopus laevis melanophores.
    Biophys J. 2009; 97(6): 1548-1557. PMCID: PMC2749791
  5. Martin GL, Ross JA, Minteer SD, Jameson DM, Cooney MJ.
    Fluorescence characterization of chemical microenvironments in hydrophobically modified chitosan.
    Carbohydr Polym. 2009; 77(4): 695-702.
  6. Fidorra M, Heimburg T, Bagatolli LA.
    Direct visualization of the lateral structure of porcine brain cerebrosides/POPC mixtures in presence and absence of cholesterol.
    Biophys J. 2009; 97(1): 142-154. PMCID: PMC2711360
  7. Suwalsky M, Novoa V, Villena F, Sotomayor CP, Aguilar LF, Ronowska A, Szutowicz A.
    Structural effects of Zn2+ on cell membranes and molecular models.
    J Inorg Biochem. 2009; 103(5): 797-804.
  8. Neubauer A, Bendig J, Rettig W.
    Control of charge transfer by conformational and electronic effects: Donor-donor and donor-acceptor phenyl pyrroles.
    Chem Phys. 2009; 358(3): 235-244.
  9. Wu B, Chen Y, Müller JD.
    Fluorescence fluctuation spectroscopy of mCherry in living cells.
    Biophys J. 2009; 96(6): 2391-404. PMCID: PMC2907682

2008

  1. Zhao Y, Knee JL, Baranger AM.
    Characterization of two adenosine analogs as fluorescence probes in RNA.
    Bioorg Chem. 2008; 36(6): 271-277. PMCID: PMC2661016
  2. Carrera DC, Vermehren C, Bagatolli LA.
    Pig skin structure and transdermal delivery of liposomes: a two photon microscopy study.
    J Control Release. 2008; 132(1): 12-20.
  3. Padilla-Parra S, Audugé N, Coppey-Moisan M, Tramier M.
    Quantitative FRET analysis by fast acquisition time domain FLIM at high spatial resolution in living cells.
    Biophys J. 2008; 95(6): 2976-2988. PMCID: PMC2527249
  4. Alston RW, Lasagna M, Grimsley GR, Scholtz JM, Reinhart GD, Pace CN.
    Peptide sequence and conformation strongly influence tryptophan fluorescence.
    Biophys J. 2008; 94(6): 2280-2287. PMCID: PMC2257887
  5. Ruan Q, Tetin SY.
    Applications of dual-color fluorescence cross-correlation spectroscopy in antibody binding studies.
    Anal Biochem. 2008; 374(1): 182-195.
  6. Jose M, Nair DK, Altrock WD, Dresbach T, Gundelfinger ED, Zuschratter W.
    Investigating interactions mediated by the presynaptic protein bassoon in living cells by Foerster's resonance energy transfer and fluorescence lifetime imaging microscopy.
    Biophys J. 2008; 94(4): 1483-1496. PMCID: PMC2212683
  7. Guizy M, David M, Arias C, Zhang L, Cofán M, Ruiz-Gutiérrez V, Ros E, Lillo MP, Martens JR, Valenzuela C.
    Modulation of the atrial specific Kv1.5 channel by the n-3 polyunsaturated fatty acid, α-linolenic acid.
    J Mol Cell Cardiol. 2008; 44(2): 323-335.

2007

  1. Montes LR, Alonso A, Goñi FM, Bagatolli LA.
    Giant unilamellar vesicles electroformed form native membranes and organic lipid mixtures under physiological conditions.
    Biophys J. 2007; 93(10): 3548-3554. PMCID: PMC2072068
  2. Plasencia I, Norlén L, Bagatolli LA.
    Direct visualization of lipid domains in human skin stratum corneum's lipid membranes: effect of pH and temperature.
    Biophys J. 2007; 93(9): 3142-3155. PMCID: PMC2025644
  3. Coutinho A, García C, González-Rodríguez J, Lillo MP.
    Conformational changes in human integrin αIIbβ3 after platelet activation, monitored by FRET.
    Biophys Chem. 2007; 130(1-2): 76-87.
  4. Jose M, Nair DK, Reissner C, Hartig R, Zuschratter W.
    Photophysics of Clomeleon by FLIM: discriminating excited state reactions along neuronal development.
    Biophys J. 2007; 92(6): 2237-2254. PMCID: PMC1861805

2005

  1. Angelier N, Tramier M, Louvet E, Coppey-Moisan M, Savino TM, de Mey JR, Hernandez-Verdun D.
    Tracking the interactions of rRNA processing proteins during nucleolar assembly in living cells.
    Mol Biol Cell. 2005; 16(6): 2862-2871. PMCID: PMC1142430
  2. Whitesell RR, Ardehali H, Beechem JM, Powers AC, van der Meer W, Perriott LM, Granner DK.
    Compartmentalization of transport and phosphorylation of glucose in a hepatoma cell line.
    Biochem J. 2005; 386(Pt 2): 245–253. PMCID: PMC1134788

2004

  1. Lin Z, Rye HS.
    Expansion and compression of a protein folding intermediate by GroEL.
    Mol Cell. 2004; 16(1): 23-34. PMCID: PMC3759401

1999

  1. Albinsson B, Li S, Lundquist K, Stomberg R.
    The origin of lignin fluorescence.
    J Mol Struct. 1999; 508(1-3): 19-27.

1998

  1. Rurack K, Bricks YL, Slominski YL, Resch U.
    Cation complexing fluorescence probes containing the benz[c,d]indole fluorophore.
    Dyes and Pigments. 1998; 36(2): 121-138.

1997

  1. Nigam S, Durocher G.
    Inclusion complexes of some 3H-indoles with cyclodextrins studied through excited state dynamics and steady state absorption and fluorescence spectroscopy.
    J Photochem Photobiol A. 1997; 103(1-2): 143–152.

1996

  1. Vámosi G, Gohlke C, Clegg RM.
    Fluorescence characteristics of 5-carboxytetramethylrhodamine linked covalently to the 5' end of oligonucleotides: multiple conformers of single-stranded and double-stranded dye-DNA complexes.
    Biophys J. 1996; 71(2): 972-94. PMCID: PMC1233554

1995

  1. Levi M, Shayman JA, Abe A, Gross SK, McCluer RH, Biber J, Murer H, Lötscher M, Cronin RE.
    Dexamethasone modulates rat renal brush border membrane phosphate transporter mRNA and protein abundance and glycosphingolipid composition.
    J Clin Invest. 1995; 96(1): 207-216. PMCID: PMC185190