Selected activities of the Laboratory for Fluorescence Dynamics (LFD) in random order.
Effective Friday, March 20, the University of California, Irvine is shutting down non-critical research until further notice.
Non-critical research will be shifted to remote operations (i.e. home), or postponed to a later date.
From March 21, only critical research will be conducted at UCI.
Fluorescently labeled Giant Unilamellar Vesicles (GUVs) are used as a model system for studying fluctuations in membranes, lipid-lipid interactions, and protein-membrane interactions.
Confocal fluorescence images of GUVs (left) are analyzed for fluctuations and polarization (right) using Globals for Images software.
The circular scanning particle tracking technique developed at the LFD allows tracking the 3D position of fluorescently labeled molecules, organelles, or viruses in live cells.
It determines and follows the center of mass of a fluorescence signal at nanometer and millisecond resolution using a laser scanning confocal microscope.
The technique has recently been extended to allow dynamic 3D imaging of fluorescently labeled surfaces in live cells and tissues.
The 14th LFD Workshop in Advanced Fluorescence Imaging and Dynamics was held on October 21 - 25, 2019. On the agenda:
Lecture notes and recordings are available.
About two dozen people are currently working at the LFD.
More than thirty students have graduated out of the LFD since its foundation in 1986.
Many former members are distinguished scientists in academia and industry.
The resource advisory committee meets annually to assist the LFD.
The LFD designs, tests, and implements advances in the fluorescence technology of hardware, software, and biomedical applications. Core projects:
The phasor plot is a "fit free", interactive approach for analyzing fluorescence lifetime-resolved images acquired in the time- or frequency-domain.
It is used to determine Förster Resonance Energy Transfer (FRET) distributions and for mapping of multiple components in cells and tissues.
The phasor plot analysis is part of the Globals for Images software.
The FLIMbox device developed at the LFD enables ultra high bandwidth, multi-channel data collection for fluorescence lifetime-resolved imaging (FLIM) from a pulsed laser scanning confocal microscope.
The device is implemented using a commercial, low cost field programmable gate array (FPGA) chip and uses the digital frequency domain (DFD) approach.
Collected data can be analyzed directly using the multi-harmonic phasor plot.
The Gregorio Weber International Prize in Biological Fluorescence is awarded by the LFD for research related to a doctoral or equivalent dissertation. All fields of biological fluorescence (experimental, theoretical, or applied) are eligible. The award is conferred approximately every three years.
The 2017 Weber Prize winner received a cash award of $2500 and an invitation to the 10th International Weber Symposium.
The Undergraduate Student Initiative for Biomedical Research (USIBR) exposes underrepresented community college students to cutting-edge technology used to study living organisms. The program provides lectures and hands-on training on the basics of microscopy, optics, imaging methods, and computational data analysis.
The LFD Colloquium is held biweekly via Zoom.
Invited guests and lab members present their work or review related literature. The audience is expected to ask questions and to evaluate the work presented.
Registration is required. Recordings are available.
Deep Imaging Via Enhanced-photon Recovery (DIVER) is a microscope system developed at the LFD capable of fluorescence imaging of tissue with up to 4 mm in depth with micron resolution.
A unique, wide surface detector allows for an 8 fold increase in the depth compared to conventional two-photon imaging. The system has been used to image intestine, heart, kidney, liver and lung tissue. It is also very efficient in Second Harmonic Generation (SHG) imaging and can be combined with Fluorescence Lifetime Imaging (FLIM).
See US Patent 8692998.
The Introductory Course in Fluorescence Techniques, Spectroscopy and Microscopy was held on March 23 - 25, 2009. On the agenda:
The LFD provides a state-of-the-art laboratory for fluorescence measurements with technical assistance to visiting scientists:
February 2012: Dr. Michelle Digman wins the Young Fluorescence Investigator Award, sponsored by HORIBA Jobin Yvon Inc.
Dr. Digman was recognized at the Biophysical Society Annual Meeting 2012 for significant advancements and contributions in or using fluorescence methodologies. More...
Globals software, originally developed in the 1980s at the LFD for the analysis of multiple files from spectroscopy, is now available for the Windows operating system (Globals for Spectroscopy) and for image analysis using the RICS, N&B, and Phasor approaches (Globals for Images aka SimFCS).
The programs are available for download.
Single plane illumination microscopy (SPIM) in an upright configuration allows for fast 3D imaging of single cells grown on glass coverslips, and of large, multicellular organisms such as zebrafish embryos.
The custom-built SPIM system at the LFD can simultaneously image two color channels, e.g. the nucleus (blue, H2B-EGFP) and mitochondria (green, TMRE) of live CHO-K1 cells (shown).
In tribute to the outstanding contributions of Gregorio Weber (1916-1997) to the field of fluorescence, the LFD organizes and sponsors the:
The 10th International Weber Symposium on Innovative Fluorescence Methodologies in Biochemistry and Medicine was held in Buzios, Brazil, on May 28 - June 2, 2017.
The symposium honors the fundamental and far-reaching contributions of Gregorio Weber. It provides an overview of modern fluorescence methodologies and applications in the biological and medical sciences.
Recordings of many lectures of previous symposia are available.
The DIVER microscope system developed at the LFD can image large tissue areas in various imaging modes.
For example, a femur slice from a SMRTmRID mouse is shown in bright field (top), second harmonic generation (SHG, middle), and fluorescence lifetime imaging (FLIM, bottom) modes. The FLIM image is phasor mapped to segment Collagen I (red) from Collagen III (turquoise) rich regions.
The symposium to honor Enrico Gratton on the occasion of his 60th birthday and 30-years of service to the University of Illinois was held on May 20, 2006 at the Loomis Laboratory of Physics, University of Illinois at Urbana-Champaign.
Presentation slides and audio recordings are available.
The 64th Annual Meeting of the Biophysical Society was held on February 15-19, 2020, in San Diego, California.
Many lab members attend the meeting and present posters and talks.
The LFD organizes an exhibitor booth, where visitors are informed about the LFDs research and service facilities. The LFD Workshop and Weber Symposium are advertised and Globals software is demonstrated.
In 2006 the LFD relocated from the University of Illinois at Urbana-Champaign to the University of California, Irvine, Biomedical Engineering Department, where it occupies a ~8000 sq. ft. facility in the interdisciplinary Natural Sciences II building.
Take a picture tour through the new facility.
